Genetic signatures of ecological diversity along an urbanization gradient

作者: Ryan P. Kelly , James L. O’Donnell , Natalie C. Lowell , Andrew O. Shelton , Jameal F. Samhouri

DOI: 10.7717/PEERJ.2444

关键词:

摘要: Despite decades of work in environmental science and ecology, estimating human influences on ecosystems remains challenging. This is partly due to complex chains causation among ecosystem elements, exacerbated by the difficulty collecting biological data at sufficient spatial, temporal, taxonomic scales. Here, we demonstrate utility DNA (eDNA) for quantifying associations between land use changes an adjacent ecosystem. We analyze metazoan eDNA sequences from water sampled nearshore marine eelgrass communities assess relationship these ecological degree urbanization surrounding watershed. Counter conventional wisdom, find strongly increasing richness decreasing beta diversity with greater urbanization, similar trends life histories urbanization. also evidence that local (hundreds meters) rather than regional (tens km) Given different survey methods sample components ecosystem, then discuss advantages eDNA-which here detect hundreds taxa simultaneously-as a complement traditional sampling, particularly context broad assessments where exhaustive manual sampling impractical. Genetic are powerful means uncovering human-ecosystem interactions might otherwise remain hidden; nevertheless, no method reveals whole community.

参考文章(60)
Sarah M. Heerhartz, Jason D. Toft, Jeffery R. Cordell, Megan N. Dethier, Andrea S. Ogston, Shoreline Armoring in an Estuary Constrains Wrack-Associated Invertebrate Communities Estuaries and Coasts. ,vol. 39, pp. 171- 188 ,(2016) , 10.1007/S12237-015-9983-X
Christopher L. Jerde, Andrew R. Mahon, W. Lindsay Chadderton, David M. Lodge, “Sight‐unseen” detection of rare aquatic species using environmental DNA Conservation Letters. ,vol. 4, pp. 150- 157 ,(2011) , 10.1111/J.1755-263X.2010.00158.X
Jean-Marc Roussel, Jean-Marc Paillisson, Anne Tréguier, Eric Petit, The downside of eDNA as a survey tool in water bodies Journal of Applied Ecology. ,vol. 52, pp. 823- 826 ,(2015) , 10.1111/1365-2664.12428
Mark C. Urban, David K. Skelly, Denise Burchsted, William Price, Sarah Lowry, Stream communities across a rural–urban landscape gradient Diversity and Distributions. ,vol. 12, pp. 337- 350 ,(2006) , 10.1111/J.1366-9516.2005.00226.X
Barbara Neumann, Athanasios T. Vafeidis, Juliane Zimmermann, Robert J. Nicholls, Future Coastal Population Growth and Exposure to Sea-Level Rise and Coastal Flooding - A Global Assessment PLOS ONE. ,vol. 10, pp. e0118571- 34 ,(2015) , 10.1371/JOURNAL.PONE.0118571
MN Dethier, Variation in recruitment does not drive the cline in diversity along an estuarine gradient. Marine Ecology Progress Series. ,vol. 410, pp. 43- 54 ,(2010) , 10.3354/MEPS08636
David Balata, Luigi Piazzi, Lisandro Benedetti-Cecchi, Sediment disturbance and loss of beta diversity on subtidal rocky reefs. Ecology. ,vol. 88, pp. 2455- 2461 ,(2007) , 10.1890/07-0053.1