Development of novel polymorphic EST-SSR markers in Californian abaloneHaliotisrufescensand genetic analysis in wild and hatchery-bred populations

作者: Andrea Aguilar-Espinoza , Natalia Valderrama-Aravena , Rodolfo Farlora , Fabiola Lafarga De la Cruz , Cristian Gallardo-Escárate

DOI: 10.1111/ARE.12141

关键词:

摘要: In this study, we describe the isolation and characterization of novel microsatellite markers for Haliotisrufescens derived from transcriptomepyrosequencing heterologous loci obtained expressed sequence tags previously reported H. discus hannai. We were able to characterize 29 59 using 94 individuals populations localized in Mexico Chile. For Mexican population, number alleles per locus ranged 2 11, while observed expected heterozygosities varied 0 0.977 0.1 0.854 respectively. Chilean populations, two eight 0.8 0.847 The average inbreeding coefficient Fis was 0.282 0.245 polymorphic information content 0.590 0.927. Pairwise fixation index Fst analysis molecular variance indicated a significantly high genetic difference between studied (Fst = 0.535). addition, cross-amplifications also evaluated fulgens, corrugate These will constitute valuable tools management strategies aquaculture production population studies.

参考文章(49)
Klaus Groh, Guido T. Poppe, A conchological iconography ConchBooks. ,(2000)
M. Chen, Y. Q. Chang, Q. Sun, L. L. Gao, Development of EST-SSRs in Japanese scallop (Mizuhopecten yessoensis) from cDNA libraries Animal Genetics. ,vol. 43, pp. 477- 478 ,(2012) , 10.1111/J.1365-2052.2011.02283.X
Salah M Aljanabi, Iciar Martinez, Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques Nucleic Acids Research. ,vol. 25, pp. 4692- 4693 ,(1997) , 10.1093/NAR/25.22.4692
A. Aguilar-Espinoza, B. Guzmán-Riffo, P. A. Haye, C. Gallardo-Escárate, Mining of EST-SSR from 454 pyrosequencing in the surf clam Mesodesma donacium (Lamark, 1818) Conservation Genetics Resources. ,vol. 4, pp. 829- 832 ,(2012) , 10.1007/S12686-012-9652-3
P. J. Smith, A. M. Conroy, Loss of genetic variation in hatchery‐produced abalone, Haliotis iris New Zealand Journal of Marine and Freshwater Research. ,vol. 26, pp. 81- 85 ,(1992) , 10.1080/00288330.1992.9516503
Rajeev K. Varshney, Ralf Sigmund, Andreas Börner, Viktor Korzun, Nils Stein, Mark E. Sorrells, Peter Langridge, Andreas Graner, Interspecific transferability and comparative mapping of barley EST-SSR markers in wheat, rye and rice Plant Science. ,vol. 168, pp. 195- 202 ,(2005) , 10.1016/J.PLANTSCI.2004.08.001
LINDSAY DAVID BROWN, BIOCHEMICAL GENETICS AND SPECIES RELATIONSHIPS WITHIN THE GENUS HALIOTIS (GASTROPODA: HALIOTIDAE) Journal of Molluscan Studies. ,vol. 59, pp. 429- 443 ,(1993) , 10.1093/MOLLUS/59.4.429