Solvation of Hydrogen Bonded Systems: CH···O, OH···O, and Cooperativity

作者: Steve Scheiner

DOI: 10.1007/978-1-4020-8270-2_15

关键词:

摘要: The effect of solvation upon hydrogen bonds is assessed by a number computational techniques. SCRF approach and its more refined variants, which treat the solvent as polarizable continuum, are compared with results obtained via treatment discrete interactions individual molecules. CH··O H-bonds very much like influence conventional OH··O bonds. Results continuum model not altered explicit inclusion first hydration sphere. H-bond energy arising from CαH group amino acids fairly substantial can even exceed NH··O in certain conformations polypeptide. On other hand, both rapidly weaken when placed an aqueous environment. Chains composed show comparable degree cooperativity do When medium, lessens along strength H-bonds. functional side chains acids, such histidine, form simultaneously at sites. Multiple follow usual patterns positive negative found within one-dimensional H-bonded chains. calculated pertinent molecule medium considerably smaller than combined interaction surrounding water However, this difference each computed vacuo, but rather

参考文章(92)
Steve Scheiner, Tapas Kar, Yanliang Gu, Strength of the CαH··O Hydrogen Bond of Amino Acid Residues Journal of Biological Chemistry. ,vol. 276, pp. 9832- 9837 ,(2001) , 10.1074/JBC.M010770200
Robert Wieczorek, J. J. Dannenberg, H-Bonding Cooperativity and Energetics of α-Helix Formation of Five 17-Amino Acid Peptides Journal of the American Chemical Society. ,vol. 125, pp. 8124- 8129 ,(2003) , 10.1021/JA035302Q
Oleg V. Shishkin, Gennady V. Palamarchuk, Leonid Gorb, Jerzy Leszczynski, Intramolecular Hydrogen Bonds in Canonical 2‘-Deoxyribonucleotides: An Atoms in Molecules Study Journal of Physical Chemistry B. ,vol. 110, pp. 4413- 4422 ,(2006) , 10.1021/JP056902+
Gloria A. A. Saracino, Annamaria Tedeschi, Gerardino D'Errico, Roberto Improta, Lorenzo Franco, Marco Ruzzi, Carlo Corvaia, Vincenzo Barone, Solvent Polarity and pH Effects on the Magnetic Properties of Ionizable Nitroxide Radicals: A Combined Computational and Experimental Study of 2,2,5,5-Tetramethyl-3-carboxypyrrolidine and 2,2,6,6-Tetramethyl-4-carboxypiperidine Nitroxides Journal of Physical Chemistry A. ,vol. 106, pp. 10700- 10706 ,(2002) , 10.1021/JP026492E
U. Koch, P. L. A. Popelier, CHARACTERIZATION OF C-H-O HYDROGEN-BONDS ON THE BASIS OF THE CHARGE-DENSITY The Journal of Physical Chemistry. ,vol. 99, pp. 9747- 9754 ,(1995) , 10.1021/J100024A016
Ibon Alkorta, Sergio Maluendes, Theoretical Study of CH.cntdot..cntdot..cntdot.O Hydrogen Bonds in H2O-CH3F, H2O-CH2F2, and H2O-CHF3 The Journal of Physical Chemistry. ,vol. 99, pp. 6457- 6460 ,(1995) , 10.1021/J100017A026
Zhi-Xiang Wang, Chun Wu, Hongxing Lei, Yong Duan, Accurate ab Initio Study on the Hydrogen-Bond Pairs in Protein Secondary Structures. Journal of Chemical Theory and Computation. ,vol. 3, pp. 1527- 1537 ,(2007) , 10.1021/CT700021F
Ole J Heilmann, Elliott H Lieb, Monomers and Dimers Physical Review Letters. ,vol. 24, pp. 1412- 1414 ,(1970) , 10.1103/PHYSREVLETT.24.1412