Four-color map representation of DNA or RNA sequences and their numerical characterization
作者： Milan Randić , Nella Lerš , Dejan Plavšić , Subhash C. Basak , Alexandru T. Balaban
DOI: 10.1016/J.CPLETT.2005.03.086
关键词:
摘要: Abstract We put forward a novel 2-D graphical representation of DNA or RNA sequences based on four-color map. The is rather compact and it not only enables one to carry out visual inspection similarity/dissimilarity between sequences, but also leads their numerical characterization. approach illustrated with the coding sequence exon 1 human β-globin gene.
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sci-hub.se 参考文章(20)
Peter Baričič, Martin Reinhard, Martin Mackov, Axel Drefahl, Handbook for estimating physicochemical properties of organic compounds Wiley. ,(1999)
Clifford A Pickover, Visualizing Biological Information Visualizing Biological Information. pp. 300- 300 ,(1995) , 10.1142/2053
Topological Indices and Related Descriptors in QSAR and QSPR Gordon & Breach. ,(1999) , 10.1201/9781482296945
From chemical topology to three-dimensional geometry Plenum Press. ,(2002) , 10.1007/B114209
Gary Ortrud R Chartrand, Applied and algorithmic graph theory ,(1992)
Milan Randić, Dejan Plavšić, Nella Lerš, Variable connectivity index for cycle-containing structures. Journal of Chemical Information and Computer Sciences. ,vol. 41, pp. 657- 662 ,(2001) , 10.1021/CI000118Z
Alexandru T. Balaban, Dejan Plavšić, Milan Randić, DNA invariants based on nonoverlapping triplets of nucleotide bases Chemical Physics Letters. ,vol. 379, pp. 147- 154 ,(2003) , 10.1016/J.CPLETT.2003.07.019
A Roy, C Raychaudhury, A Nandy, None, Novel techniques of graphical representation and analysis of DNA sequences—A review Journal of Biosciences. ,vol. 23, pp. 55- 71 ,(1998) , 10.1007/BF02728525
Harry P. Schultz, Topological organic chemistry. 13. Transformation of graph adjacency matrixes to distance matrixes Journal of Chemical Information and Computer Sciences. ,vol. 40, pp. 1158- 1159 ,(2000) , 10.1021/CI0000225
Zlatko Mihalić, Darko Veljan, Dragan Amić, Sonja Nikolić, Dejan Plavšić, Nenad Trinajstić, The Distance Matrix in Chemistry Journal of Mathematical Chemistry. ,vol. 11, pp. 223- 258 ,(1992) , 10.1007/BF01164206