High-Resolution Protein Structure Determination by NMR
作者： Hiroyuki Takashima
DOI: 10.1016/S0066-4103(06)59005-2
关键词:
摘要: The quality of the three-dimensional structure proteins determined by nmr is influenced many factors. factors are reviewed focusing on calculation problems. High-performance computing implementations introduced to improve conformational sampling calculations. and improvements nmr-derived structural information also discussed.
sci-hub.se 参考文章(132)
Charles D Schwieters, John J Kuszewski, Nico Tjandra, G Marius Clore, The Xplor-NIH NMR molecular structure determination package. Journal of Magnetic Resonance. ,vol. 160, pp. 65- 73 ,(2003) , 10.1016/S1090-7807(02)00014-9
Keyang Ding, Angela M. Gronenborn, Protein backbone 1HN-13Cα and 15N-13Cα residual dipolar and J couplings: New constraints for nmr structure determination Journal of the American Chemical Society. ,vol. 126, pp. 6232- 6233 ,(2004) , 10.1021/JA049049L
Christian AEM Spronk, Jens P Linge, Cornelis W Hilbers, Geerten W Vuister, None, Improving the quality of protein structures derived by NMR spectroscopy Journal of Biomolecular NMR. ,vol. 22, pp. 281- 289 ,(2002) , 10.1023/A:1014971029663
Pervushin, Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution Proc. Natl. Acad. Sci. USA. ,vol. 94, pp. 12366- 12371 ,(1997)
Bin Xia, Vickie Tsui, David A. Case, H. Jane Dyson, Peter E. Wright, Comparison of protein solution structures refined by molecular dynamics simulation in vacuum, with a generalized Born model, and with explicit water. Journal of Biomolecular NMR. ,vol. 22, pp. 317- 331 ,(2002) , 10.1023/A:1014929925008
Ivano Bertini, Gabriele Cavallaro, Claudio Luchinat, Irene Poli, A use of Ramachandran potentials in protein solution structure determinations. Journal of Biomolecular NMR. ,vol. 26, pp. 355- 366 ,(2003) , 10.1023/A:1024092421649
Daniel Monleón, Kimberly Colson, Hunter N. B. Moseley, Clemens Anklin, Robert Oswald, Thomas Szyperski, Gaetano T. Montelione, Rapid analysis of protein backbone resonance assignments using cryogenic probes, a distributed Linux-based computing architecture, and an integrated set of spectral analysis tools Journal of Structural and Functional Genomics. ,vol. 2, pp. 93- 101 ,(2002) , 10.1023/A:1020499629298
Jérôme Boisbouvier, Martin Blackledge, Albéric Sollier, Dominique Marion, Simultaneous determination of disulphide bridge topology and three-dimensional structure using ambiguous intersulphur distance restraints: possibilities and limitations. Journal of Biomolecular NMR. ,vol. 16, pp. 197- 208 ,(2000) , 10.1023/A:1008354007926
Axel T. Brünger, X-PLOR Version 3.1: A System for X-ray Crystallography and NMR ,(1992)
Kurt Wuthrich, NMR of proteins and nucleic acids ,(1986)