Using data-independent, high-resolution mass spectrometry in protein biomarker research: perspectives and clinical applications.

作者: Tatjana Sajic , Yansheng Liu , Ruedi Aebersold

DOI: 10.1002/PRCA.201400117

关键词:

摘要: … from the DDA discovery of the biomarkers. As explained above, the stochastic nature of DDA tends to … DDA mode, and significantly higher levels of multiplexing than is afforded by SRM. …

参考文章(108)
C.M. Delahunty, J.R. Yates, Tech insight. MudPIT: Multidimensional protein identification technology. BioTechniques. ,vol. 43, pp. 563- 569 ,(2007)
Anna M. Zawadzka, Birgit Schilling, Jason M. Held, Alexandria K. Sahu, Michael P. Cusack, Penelope M. Drake, Susan J. Fisher, Bradford W. Gibson, Variation and quantification among a target set of phosphopeptides in human plasma by multiple reaction monitoring and SWATH-MS2 data-independent acquisition. Electrophoresis. ,vol. 35, pp. 3487- 3497 ,(2014) , 10.1002/ELPS.201400167
Claire M. Delahunty, John R. Yates, MudPIT: multidimensional protein identification technology. BioTechniques. ,vol. 43, ,(2007)
N. Leigh Anderson, Malu Polanski, A list of candidate cancer biomarkers for targeted proteomics. Biomarker Insights. ,vol. 1, pp. 1- 48 ,(2006) , 10.4137/BMI.S0
John D. Chapman, David R. Goodlett, Christophe D. Masselon, Multiplexed and data-independent tandem mass spectrometry for global proteome profiling Mass Spectrometry Reviews. ,vol. 33, pp. 452- 470 ,(2014) , 10.1002/MAS.21400
Jean-Philippe Lambert, Gordana Ivosev, Amber L Couzens, Brett Larsen, Mikko Taipale, Zhen-Yuan Lin, Quan Zhong, Susan Lindquist, Marc Vidal, Ruedi Aebersold, Tony Pawson, Ron Bonner, Stephen Tate, Anne-Claude Gingras, Mapping differential interactomes by affinity purification coupled with data-independent mass spectrometry acquisition Nature Methods. ,vol. 10, pp. 1239- 1245 ,(2013) , 10.1038/NMETH.2702
Silvia Surinova, Ralph Schiess, Ruth Hüttenhain, Ferdinando Cerciello, Bernd Wollscheid, Ruedi Aebersold, On the Development of Plasma Protein Biomarkers Journal of Proteome Research. ,vol. 10, pp. 5- 16 ,(2011) , 10.1021/PR1008515
Shawna Mae Hengel, Euan Murray, Simon Langdon, Larry Hayward, Jean O’Donoghue, Alexandre Panchaud, Ted Hupp, David R. Goodlett, Data-independent proteomic screen identifies novel tamoxifen agonist that mediates drug resistance. Journal of Proteome Research. ,vol. 10, pp. 4567- 4578 ,(2011) , 10.1021/PR2004117
Jeffrey C. Silva, Richard Denny, Craig A. Dorschel, Marc Gorenstein, Ignatius J. Kass, Guo-Zhong Li, Therese McKenna, Michael J. Nold, Keith Richardson, Phillip Young, Scott Geromanos, Quantitative proteomic analysis by accurate mass retention time pairs. Analytical Chemistry. ,vol. 77, pp. 2187- 2200 ,(2005) , 10.1021/AC048455K
Tommy Nilsson, Matthias Mann, Ruedi Aebersold, John R Yates III, Amos Bairoch, John JM Bergeron, None, Mass spectrometry in high-throughput proteomics: ready for the big time Nature Methods. ,vol. 7, pp. 681- 685 ,(2010) , 10.1038/NMETH0910-681