Draft genome sequence of Bacillus paralicheniformis TRQ65, a biological control agent and plant growth-promoting bacterium isolated from wheat (Triticum turgidum subsp. durum) rhizosphere in the Yaqui Valley, Mexico.

作者: Valeria Valenzuela-Ruiz , Rosa Icela Robles-Montoya , Fannie Isela Parra-Cota , Gustavo Santoyo , Ma. del Carmen Orozco-Mosqueda

DOI: 10.1007/S13205-019-1972-5

关键词:

摘要: The strain denominated TRQ65 was isolated from wheat (Triticum turgidum subsp. durum) commercial fields in the Yaqui Valley, Mexico. Here, we report its draft genome sequence, which presented ~ 4.5 million bp and 45.5% G + C content. Based on cutoff values species delimitation established for average nucleotide identity (> 95 to 96%), genome-to-genome distance calculator (> 70%), reference sequence alignment-based phylogeny builder method, strongly affiliated Bacillus paralicheniformis. rapid annotation using subsystem technology server revealed that contains genes related osmotic, oxidative stress response, as well auxin biosynthesis (plant growth promotion traits). In addition, antiSMASH BAGEL presence of involved lipopeptides antibiotic biosynthesis. function those annotated validated at a metabolic level, observing able tolerate saline (91.0%), water (155.0%) conditions, besides producing 28.8 ± 0.9 µg/mL indoles. showed inhibition (1.6 ± 0.4 cm zone) against causal agent spot blotch, Bipolaris sorokiniana. Finally, plant–microbe interactions assays confirm ability regulate growth, showing significant increment shoot height (26%), root length (40%), dry weight (48%), stem diameter (55%), biovolume index (246%). These findings provide insights future agricultural studies this strain.

参考文章(39)
Neha J. Varghese, Supratim Mukherjee, Natalia Ivanova, Konstantinos T. Konstantinidis, Kostas Mavrommatis, Nikos C. Kyrpides, Amrita Pati, Microbial species delineation using whole genome sequences Nucleic Acids Research. ,vol. 43, pp. 6761- 6771 ,(2015) , 10.1093/NAR/GKV657
Aaron CE Darling, Bob Mau, Frederick R Blattner, Nicole T Perna, Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Research. ,vol. 14, pp. 1394- 1403 ,(2004) , 10.1101/GR.2289704
Ramy K Aziz, Daniela Bartels, Aaron A Best, Matthew DeJongh, Terrence Disz, Robert A Edwards, Kevin Formsma, Svetlana Gerdes, Elizabeth M Glass, Michael Kubal, Folker Meyer, Gary J Olsen, Robert Olson, Andrei L Osterman, Ross A Overbeek, Leslie K McNeil, Daniel Paarmann, Tobias Paczian, Bruce Parrello, Gordon D Pusch, Claudia Reich, Rick Stevens, Olga Vassieva, Veronika Vonstein, Andreas Wilke, Olga Zagnitko, The RAST Server: Rapid Annotations using Subsystems Technology BMC Genomics. ,vol. 9, pp. 75- 75 ,(2008) , 10.1186/1471-2164-9-75
Charles A. Downs, David Trac, Elizabeth M. Brewer, Lou Ann Brown, My N. Helms, Chronic Alcohol Ingestion Changes the Landscape of the Alveolar Epithelium BioMed Research International. ,vol. 2013, pp. 1- 7 ,(2013) , 10.1155/2013/470217
Roeland L. Berendsen, Corné M.J. Pieterse, Peter A.H.M. Bakker, The rhizosphere microbiome and plant health Trends in Plant Science. ,vol. 17, pp. 478- 486 ,(2012) , 10.1016/J.TPLANTS.2012.04.001
Darine Trabelsi, Ridha Mhamdi, Microbial inoculants and their impact on soil microbial communities: a review. BioMed Research International. ,vol. 2013, pp. 863240- 863240 ,(2013) , 10.1155/2013/863240
Atiqur Rahman, Irnayuli R Sitepu, Sui-Yan Tang, Yasuyuki Hashidoko, None, Salkowski’s Reagent Test as a Primary Screening Index for Functionalities of Rhizobacteria Isolated from Wild Dipterocarp Saplings Growing Naturally on Medium-Strongly Acidic Tropical Peat Soil Bioscience, Biotechnology, and Biochemistry. ,vol. 74, pp. 2202- 2208 ,(2010) , 10.1271/BBB.100360
Brian B. McSpadden Gardener, Ecology of Bacillus and Paenibacillus spp. in Agricultural Systems. Phytopathology. ,vol. 94, pp. 1252- 1258 ,(2004) , 10.1094/PHYTO.2004.94.11.1252
Federica Barra, Emanuela Roscetto, Amata Soriano, Adriana Vollaro, Ilaria Postiglione, Giovanna Pierantoni, Giuseppe Palumbo, Maria Catania, Photodynamic and Antibiotic Therapy in Combination to Fight Biofilms and Resistant Surface Bacterial Infections. International Journal of Molecular Sciences. ,vol. 16, pp. 20417- 20430 ,(2015) , 10.3390/IJMS160920417
Jan P Meier-Kolthoff, Alexander F Auch, Hans-Peter Klenk, Markus Göker, Genome sequence-based species delimitation with confidence intervals and improved distance functions BMC Bioinformatics. ,vol. 14, pp. 60- 60 ,(2013) , 10.1186/1471-2105-14-60