Rapid identification of species, sex and maturity by mass spectrometric analysis of animal faeces

作者: Nicola B. Davidson , Natalie I. Koch , Joscelyn Sarsby , Emrys Jones , Jane L. Hurst

DOI: 10.1186/S12915-019-0686-9

关键词:

摘要: We describe a new approach to the recovery of information from faecal samples, based on analysis molecular signature generated by rapid evaporative ionisation mass spectrometry (REIMS). Faecal pellets five different rodent species were analysed REIMS, and complex spectra acquired rapidly (typically few seconds per sample). The uninterpreted (signatures) then used seed linear discriminant classification models random forests. It was possible classify each origin with high rate accuracy, whether faeces animals maintained under standard laboratory conditions or wild-caught. REIMS signatures stable prior storage material range not altered radically changes in diet. Further, within species, could be discriminate adult versus juvenile mice, male female mice those three strains. offers completely novel method for extending (previously focused DNA) an assessment phenotype, has considerable potential as tool armamentarium field biologist.

参考文章(40)
Matthew Wiener, Andy Liaw, Classification and Regression by randomForest ,(2007)
Ulrike Hadinger, Agnes Haymerle, Felix Knauer, Franz Schwarzenberger, Chris Walzer, Faecal cortisol metabolites to assess stress in wildlife: evaluation of a field method in free‐ranging chamois Methods in Ecology and Evolution. ,vol. 6, pp. 1349- 1357 ,(2015) , 10.1111/2041-210X.12422
E. Möstl, J.L. Maggs, G. Schrötter, U. Besenfelder, R. Palme, Measurement of cortisol metabolites in faeces of ruminants. Veterinary Research Communications. ,vol. 26, pp. 127- 139 ,(2002) , 10.1023/A:1014095618125
Jon A. Beck, Sarah Lloyd, Majid Hafezparast, Moyha Lennon-Pierce, Janan T. Eppig, Michael F.W. Festing, Elizabeth M.C. Fisher, Genealogies of mouse inbred strains. Nature Genetics. ,vol. 24, pp. 23- 25 ,(2000) , 10.1038/71641
Nicholette D Palmer, Caitrin W McDonough, Pamela J Hicks, Bong H Roh, Maria R Wing, S Sandy An, Jessica M Hester, Jessica N Cooke, Meredith A Bostrom, Megan E Rudock, Matthew E Talbert, Joshua P Lewis, Diagram Consortium, Magic Investigators, Assiamira Ferrara, Lingyi Lu, Julie T Ziegler, Michele M Sale, Jasmin Divers, Daniel Shriner, Adebowale Adeyemo, Charles N Rotimi, Maggie CY Ng, Carl D Langefeld, Barry I Freedman, Donald W Bowden, None, A genome-wide association search for type 2 diabetes genes in African Americans. PLOS ONE. ,vol. 7, pp. 1- 14 ,(2012) , 10.1371/JOURNAL.PONE.0029202
L. Gorini, S. J. Wedul, J. M. Arnemo, J. D. C. Linnell, L. Boitani, E. B. Nilsen, Field anesthesia of least weasels (Mustela nivalis nivalis) with isoflurane Wildlife Biology in Practice. ,vol. 9, pp. 7- 13 ,(2013) , 10.2461/WBP.2013.9.2
Karl-Christian Schäfer, Júlia Dénes, Katalin Albrecht, Tamás Szaniszló, Júlia Balog, Réka Skoumal, Mária Katona, Miklós Tóth, Lajos Balogh, Zoltán Takáts, In vivo, in situ tissue analysis using rapid evaporative ionization mass spectrometry. Angewandte Chemie. ,vol. 48, pp. 8240- 8242 ,(2009) , 10.1002/ANIE.200902546
L. S. Eggert, J. A. Eggert, D. S. Woodruff, Estimating population sizes for elusive animals: the forest elephants of Kakum National Park, Ghana Molecular Ecology. ,vol. 12, pp. 1389- 1402 ,(2003) , 10.1046/J.1365-294X.2003.01822.X
Hideaki Inagaki, Yasushi Kiyokawa, Shigeyuki Tamogami, Hidenori Watanabe, Yukari Takeuchi, Yuji Mori, Identification of a pheromone that increases anxiety in rats Proceedings of the National Academy of Sciences of the United States of America. ,vol. 111, pp. 18751- 18756 ,(2014) , 10.1073/PNAS.1414710112