Plastome phylogenomics and phylogenetic diversity of endangered and threatened grassland species (Poaceae) in a North American tallgrass prairie

作者: Phyllis H. Pischl , Sean V. Burke , Elizabeth M. Bach , Melvin R. Duvall

DOI: 10.1002/ECE3.6484

关键词:

摘要: Native grasslands are one of the most endangered ecosystems in North America. In this study, we examined ecological and evolutionary roles threatened (e/t) grasses by establishing robust relationships with other nonthreatened native introduced grass species community. We hypothesized that phylogenomic distribution e/t Illinois would be phylogenetically clustered because closely related vulnerable to same threats have similar requirements for survival. This study presents first time a phylogeny based on complete plastome DNA Poaceae was analyzed phylogenetic diversity analysis. To avoid disturbance populations, extracted from herbarium specimens. Next-generation sequencing (NGS) techniques were used sequence plastid genomes (plastomes). The resulting tree metrics. successfully produced plastomes demonstrating material is practical source genomic studies. strongly supported defined Dichanthelium as separate clade Panicum. metrics revealed clustering species, confirming our hypothesis.

参考文章(53)
Limin Fu, Beifang Niu, Zhengwei Zhu, Sitao Wu, Weizhong Li, CD-HIT Bioinformatics. ,vol. 28, pp. 3150- 3152 ,(2012) , 10.1093/BIOINFORMATICS/BTS565
Nicholas A. Barber, Holly P. Jones, Melvin R. Duvall, William P. Wysocki, Michael J. Hansen, David J. Gibson, Phylogenetic diversity is maintained despite richness losses over time in restored tallgrass prairie plant communities Journal of Applied Ecology. ,vol. 54, pp. 137- 144 ,(2017) , 10.1111/1365-2664.12639
Frank W. Gould, Carolyn A. Clark, Dichanthelium (Poaceae) in the United States and Canada Annals of the Missouri Botanical Garden. ,vol. 65, pp. 1088- 1132 ,(1978) , 10.2307/2398783
Melvin R. Duvall, Amanda E. Fisher, J. Travis Columbus, Amanda L. Ingram, William P. Wysocki, Sean V. Burke, Lynn G. Clark, Scot A. Kelchner, Phylogenomics and Plastome Evolution of the Chloridoid Grasses (Chloridoideae: Poaceae) International Journal of Plant Sciences. ,vol. 177, pp. 235- 246 ,(2016) , 10.1086/684526
Sean V. Burke, William P. Wysocki, Fernando O. Zuloaga, Joseph M. Craine, J. Chris Pires, Patrick P. Edger, Dustin Mayfield-Jones, Lynn G. Clark, Scot A. Kelchner, Melvin R. Duvall, Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae). BMC Plant Biology. ,vol. 16, pp. 140- 140 ,(2016) , 10.1186/S12870-016-0823-3
Sean V. Burke, Choun-Sea Lin, William P. Wysocki, Lynn G. Clark, Melvin R. Duvall, Phylogenomics and Plastome Evolution of Tropical Forest Grasses (Leptaspis, Streptochaeta: Poaceae) Frontiers in Plant Science. ,vol. 7, pp. 1993- 1993 ,(2016) , 10.3389/FPLS.2016.01993
Christian Silva, Guillaume Besnard, Anthony Piot, Jacqueline Razanatsoa, Reyjane P. Oliveira, Maria S. Vorontsova, Museomics resolve the systematics of an endangered grass lineage endemic to north-western Madagascar. Annals of Botany. ,vol. 119, pp. 339- 351 ,(2017) , 10.1093/AOB/MCW208
Rebecca S. Barak, Evelyn W. Williams, Andrew L. Hipp, Marlin L. Bowles, Gabriela M. Carr, Robert Sherman, Daniel J. Larkin, Restored tallgrass prairies have reduced phylogenetic diversity compared with remnants Journal of Applied Ecology. ,vol. 54, pp. 1080- 1090 ,(2017) , 10.1111/1365-2664.12881