Population and Conservation Genomics in Forest and Fruit Trees

作者: Filippos A. Aravanopoulos , Ioannis Ganopoulos , Athanasios Tsaftaris

DOI: 10.1016/BS.ABR.2015.04.001

关键词:

摘要: Abstract Population and conservation genomics in forest fruit trees are advancing at an accelerated rate due to the recent developments high-throughput next-generation sequencing capabilities. Our ability understand wealth structure of genetic variation nature, plantations orchards, processes selection, adaptation speciation will be limited future more by conceptual analytical weaknesses biostatistical tools, than amount sequence data available. discussed considering still elusive elucidation quantitative adaptive molecular level. This chapter focuses on use genome-wide sampling discern evolutionary spatially explicit patterns genomic variation. The transition from genetics increase manifold our select prioritize targets. Conservation lead identification particular regions that may have undergone natural selection significance, addition improving precision demographic inferences significantly raising number putatively neutral markers assayed. Comparative analysis with cultivated facilitate understanding domestication dispersal effects tree genomes effect breeding gene selected genome effects.

参考文章(110)
Paul Visendi, Jacqueline Batley, David Edwards, Next Generation Sequencing and Germplasm Resources Genomics of Plant Genetic Resources: Volume 1. Managing, Sequencing and Mining Genetic Resources. ,vol. 1, pp. 369- 390 ,(2014) , 10.1007/978-94-007-7572-5_15
Aljos Farjon, A natural history of conifers ,(2008)
THOMAS L. PARCHMAN, ZACHARIAH GOMPERT, JOANN MUDGE, FAYE D. SCHILKEY, CRAIG W. BENKMAN, C. ALEX BUERKLE, Genome‐wide association genetics of an adaptive trait in lodgepole pine Molecular Ecology. ,vol. 21, pp. 2991- 3005 ,(2012) , 10.1111/J.1365-294X.2012.05513.X
Frédéric Austerlitz, Bernard Godelle, Bernard Godelle, Nathalie Machon, Stéphanie Mariette, Pierre-Henri Gouyon, Effects of Colonization Processes on Genetic Diversity: Differences Between Annual Plants and Tree Species Genetics. ,vol. 154, pp. 1309- 1321 ,(2000) , 10.1093/GENETICS/154.3.1309
Rong-Lin Wang, Adrian Stec, Jody Hey, Lewis Lukens, John Doebley, The limits of selection during maize domestication Nature. ,vol. 398, pp. 236- 239 ,(1999) , 10.1038/18435
Antoni Rafalski, Michele Morgante, Corn and humans: recombination and linkage disequilibrium in two genomes of similar size Trends in Genetics. ,vol. 20, pp. 103- 111 ,(2004) , 10.1016/J.TIG.2003.12.002
Barry J. McMahon, Emma C. Teeling, Jacob Höglund, How and why should we implement genomics into conservation Evolutionary Applications. ,vol. 7, pp. 999- 1007 ,(2014) , 10.1111/EVA.12193
Stéphanie Manel, Rolf Holderegger, Ten years of landscape genetics Trends in Ecology & Evolution. ,vol. 28, pp. 614- 621 ,(2013) , 10.1016/J.TREE.2013.05.012
Santiago C. González-Martínez, Elhan Ersoz, Garth R. Brown, Nicholas C. Wheeler, David B. Neale, DNA sequence variation and selection of tag single-nucleotide polymorphisms at candidate genes for drought-stress response in Pinus taeda L. Genetics. ,vol. 172, pp. 1915- 1926 ,(2006) , 10.1534/GENETICS.105.047126
Michael G. Palmgren, Anna Kristina Edenbrandt, Suzanne Elizabeth Vedel, Martin Marchman Andersen, Xavier Landes, Jeppe Thulin Østerberg, Janus Falhof, Lene Irene Olsen, Søren Brøgger Christensen, Peter Sandøe, Christian Gamborg, Klemens Kappel, Bo Jellesmark Thorsen, Peter Pagh, Are we ready for back-to-nature crop breeding? Trends in Plant Science. ,vol. 20, pp. 155- 164 ,(2015) , 10.1016/J.TPLANTS.2014.11.003