Mining the Semantics of Genome Super-Blocks to Infer Ancestral Architectures

作者: Géraldine Jean , David James Sherman , Macha Nikolski

DOI: 10.1089/CMB.2008.0046

关键词:

摘要: Abstract The study of evolutionary mechanisms is made more and accurate by the increase in number fully sequenced genomes. One main problems to reconstruct plausible ancestral...

参考文章(29)
Itsik Pe'er, Ron Shamir, The median problems for breakpoints are NP-complete Electronic Colloquium on Computational Complexity. ,vol. 5, ,(1998)
Kenneth H. Wolfe, Denis C. Shields, Molecular evidence for an ancient duplication of the entire yeast genome Nature. ,vol. 387, pp. 708- 713 ,(1997) , 10.1038/42711
Niklas Eriksen, Reversal and transposition medians Theoretical Computer Science. ,vol. 374, pp. 111- 126 ,(2007) , 10.1016/J.TCS.2006.12.006
Guillaume Bourque, Glenn Tesler, Pavel A Pevzner, The convergence of cytogenetics and rearrangement-based models for ancestral genome reconstruction Genome Research. ,vol. 16, pp. 311- 313 ,(2006) , 10.1101/GR.4631806
J. H. Nadeau, B. A. Taylor, Lengths of chromosomal segments conserved since divergence of man and mouse. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 81, pp. 814- 818 ,(1984) , 10.1073/PNAS.81.3.814
M. Rocchi, N. Archidiacono, R. Stanyon, Ancestral genomes reconstruction: An integrated, multi-disciplinary approach is needed Genome Research. ,vol. 16, pp. 1441- 1444 ,(2006) , 10.1101/GR.5687906
David Sankoff, Phil Trinh, Chromosomal breakpoint reuse in genome sequence rearrangement. Journal of Computational Biology. ,vol. 12, pp. 812- 821 ,(2005) , 10.1089/CMB.2005.12.812
Guillaume Bourque, Evgeny M Zdobnov, Peer Bork, Pavel A Pevzner, Glenn Tesler, Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages. Genome Research. ,vol. 15, pp. 98- 110 ,(2005) , 10.1101/GR.3002305