Analysis of DNA sequences using methods of statistical physics
作者： S.V. Buldyrev , N.V. Dokholyan , A.L. Goldberger , S. Havlin , C.-K. Peng
DOI: 10.1016/S0378-4371(97)00503-7
关键词:
摘要: We review the present status of studies DNA sequences using methods statistical physics. evidence, based on systematic entire GenBank database, supporting idea that sequence in genes containing noncoding regions is correlated, and correlation remarkably long range, i.e., base pairs thousands distant are correlated. do not find such a long-range coding DNA. discuss mechanisms molecular evolution may lead to presence power-law correlations their absence One mechanism simple repeat expansion, which recently has attracted attention biological community conjunction with genetic diseases. also new tools – e.g., detrended fluctuation analysis useful for complex hierarchical structure.
harvard.edu
elsevier.com
sci-hub.se 参考文章(79)
Dietrich Stauffer, H. Eugene Stanley, From Newton to Mandelbrot: A Primer in Theoretical Physics with Fractals for the Macintosh ,(1995)
Random fluctuations and pattern growth : experiments and models Kluwer Academic Publishers. ,(1988) , 10.1007/978-94-009-2653-0
T Vicsek, M Shlesinger, M Matsushita, Fractals in Natural Sciences fns. ,(1994) , 10.1142/2235
Growth Patterns in Physical Sciences and Biology Plenum Press. ,(1993) , 10.1007/978-1-4615-2852-4
Nicole Ostrowsky, Harry Eugene Stanley, Correlations and connectivity : geometric aspects of physics, chemistry, and biology Kluwer Academic Publishers. ,(1990)
Michael Shlesinger, The Noise in Natural Phenomena American Scientist. ,vol. 78, pp. 40- 45 ,(2016)
Shlomo Havlin, Armin Bunde, Fractals and Disordered Systems ,(1991)
H.E. STANLEY, S.V. BULDYREV, A.L. GOLDBERGER, S. HAVLIN, S.M. OSSADNIK, C.-K. PENG, M. SIMONS, FRACTAL LANDSCAPES IN BIOLOGICAL SYSTEMS Fractals. ,vol. 01, pp. 283- 301 ,(1993) , 10.1142/S0218348X93000319
V. V. Prabhu, J.-M. Claverie, Correlations in intronless DNA. Nature. ,vol. 359, pp. 782- 782 ,(1992) , 10.1038/359782A0
G.M. Viswanathan, S.V. Buldyrev, S. Havlin, H.E. Stanley, Long-range correlation measures for quantifying patchiness: Deviations from uniform power-law scaling in genomic DNA Physica A-statistical Mechanics and Its Applications. ,vol. 249, pp. 581- 586 ,(1998) , 10.1016/S0378-4371(97)00519-0