Affinity enrichment for mass spectrometry: improving the yield of low abundance biomarkers.

作者: Brianna Kim , Robyn Araujo , Marissa Howard , Ruben Magni , Lance A. Liotta

DOI: 10.1080/14789450.2018.1450631

关键词:

摘要: Introduction: Mass spectrometry (MS) is the premier tool for discovering novel disease-associated protein biomarkers. Unfortunately, when applied to complex body fluid samples, MS has poor sensitivity detection of low abundance biomarkers (≪10 ng/mL), derived directly from diseased tissue cells or pathogens. Areas covered: Herein we discuss strengths and drawbacks technologies used concentrate analytes in fluids, with aim improve effective discovery. Solvent removal by dry-down dialysis, immune-depletion high serum plasma proteins, shown have disadvantages compared positive selection candidate affinity enrichment. A theoretical analysis enrichment reveals that yield a direct function binding (Association/Dissociation rates) biomarker capture. In addition, capture pre processing step can effectively dissociate partitioning proteins such as albumin. Expert commentary: Properly designed materials enrich (0.1–10 picograms/mL) detection. Affinity concentration, an upfront sample preparation MS, combined advances software hardware resolution chromatographic separation transformative new class predicting disease risk latency.

参考文章(70)
Paula Meleady, 2D gel electrophoresis and mass spectrometry identification and analysis of proteins. Methods of Molecular Biology. ,vol. 784, pp. 123- 137 ,(2011) , 10.1007/978-1-61779-289-2_9
Jonathan A. Schumacher, David K. Crockett, Kojo S.J. Elenitoba-Johnson, Megan S. Lim, Evaluation of Enrichment Techniques for Mass Spectrometry: Identification of Tyrosine Phosphoproteins in Cancer Cells The Journal of Molecular Diagnostics. ,vol. 9, pp. 169- 177 ,(2007) , 10.2353/JMOLDX.2007.060031
Sheng Pan, Ruedi Aebersold, Ru Chen, John Rush, David R. Goodlett, Martin W. McIntosh, Jing Zhang, Teresa A. Brentnall, Mass Spectrometry Based Targeted Protein Quantification: Methods and Applications Journal of Proteome Research. ,vol. 8, pp. 787- 797 ,(2009) , 10.1021/PR800538N
Shuang Yang, Hui Zhang, Solid‐phase glycan isolation for glycomics analysis Proteomics Clinical Applications. ,vol. 6, pp. 596- 608 ,(2012) , 10.1002/PRCA.201200045
Davide Tamburro, Claudia Fredolini, Virginia Espina, Temple A. Douglas, Adarsh Ranganathan, Leopold Ilag, Weidong Zhou, Paul Russo, Benjamin H. Espina, Giovanni Muto, Emanuel F. Petricoin, Lance A. Liotta, Alessandra Luchini, Multifunctional Core–Shell Nanoparticles: Discovery of Previously Invisible Biomarkers Journal of the American Chemical Society. ,vol. 133, pp. 19178- 19188 ,(2011) , 10.1021/JA207515J
Lyris MF De Godoy, Jesper V Olsen, Jürgen Cox, Michael L Nielsen, Nina C Hubner, Florian Fröhlich, Tobias C Walther, Matthias Mann, None, Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast Nature. ,vol. 455, pp. 1251- 1254 ,(2008) , 10.1038/NATURE07341
Donald J. Johann, Bih-Rong Wei, DaRue A. Prieto, King C. Chan, Xiaying Ye, Vladimir A. Valera, R. Mark Simpson, Paul A. Rudnick, Zhen Xiao, Haleem J. Issaq, W. Marston Linehan, Stephen E. Stein, Timothy D. Veenstra, Josip Blonder, Combined Blood/Tissue Analysis for Cancer Biomarker Discovery: Application to Renal Cell Carcinoma Analytical Chemistry. ,vol. 82, pp. 1584- 1588 ,(2010) , 10.1021/AC902204K
Veronika Polaskova, Amit Kapur, Alamgir Khan, Mark P. Molloy, Mark S. Baker, High-abundance protein depletion: comparison of methods for human plasma biomarker discovery. Electrophoresis. ,vol. 31, pp. 471- 482 ,(2010) , 10.1002/ELPS.200900286
Temple A. Douglas, Davide Tamburro, Claudia Fredolini, Benjamin H. Espina, Benjamin S. Lepene, Leopold Ilag, Virginia Espina, Emanuel F. Petricoin, Lance A. Liotta, Alessandra Luchini, The use of hydrogel microparticles to sequester and concentrate bacterial antigens in a urine test for Lyme disease Biomaterials. ,vol. 32, pp. 1157- 1166 ,(2011) , 10.1016/J.BIOMATERIALS.2010.10.004
Patrik Önnerfjord, Sergei A Eremin, Jenny Emnéus, György Marko-Varga, High sample throughput flow immunoassay utilising restricted access columns for the separation of bound and free label Journal of Chromatography A. ,vol. 800, pp. 219- 230 ,(1998) , 10.1016/S0021-9673(97)01159-X