Kinetic assay for measurement of enzyme concentration in situ

作者: Hugo Vicente Miranda , António E.N. Ferreira , Carlos Cordeiro , Ana Ponces Freire

DOI: 10.1016/J.AB.2005.09.002

关键词:

摘要: Metabolic pathway analysis requires accurate data regarding enzyme kinetic parameters and metabolite concentrations inside living cells. Intracellular concentration is a critical parameter that notoriously difficult to obtain. We propose method, based on addition, quantify the amount of specific enzymes in metabolic pathways. The known for vast majority were obtained vitro with purified enzymes.More recently, emergence sequenced genomes, use recombinant proteins as sources are now common practice, replacing laborious purification from original organism by production large amounts protein suitable host such Escherichia coli. However, this approach poses major problems analysis. Post-translational modifications not likely occur, protein–protein interactions may be absent. Better strategies clearly needed investigating way more closely resembling vivo state. Recently, noninvasive techniques fluorescence spectroscopy nuclear magnetic resonance (NMR) assuming greater importance but still endure serious limitations [1,2]. Fluorescence restricted few metabolites, namely NAD(P)H, or probes introduced nondestructive In NMR shows great promise hampered its limited time resolution sensitivity. Moreover, intact systems do allow good control individual substrate reaction conditions pH. An alternative study situ [3]. This invasive technique selective cell membrane permeabilization low-molecular weight mole-

参考文章(11)
Peter Friedrich, Supramolecular enzyme organization : quaternary structure and beyond Pergamon Press , Akadémiai Kiadó. ,(1984)
Ana Margarida Martins, Pedro Mendes, Carlos Cordeiro, Ana Ponces Freire, In situ kinetic analysis of glyoxalase I and glyoxalase II in Saccharomyces cerevisiae. FEBS Journal. ,vol. 268, pp. 3930- 3936 ,(2001) , 10.1046/J.1432-1327.2001.02304.X
Marta Sousa Silva, António E. N. Ferreira, Ana Maria Tomás, Carlos Cordeiro, Ana Ponces Freire, Quantitative assessment of the glyoxalase pathway in Leishmania infantum as a therapeutic target by modelling and computer simulation. FEBS Journal. ,vol. 272, pp. 2388- 2398 ,(2005) , 10.1111/J.1742-4658.2005.04632.X
Rainer Storn, Kenneth Price, Differential Evolution – A Simple and Efficient Heuristic for Global Optimization over Continuous Spaces Journal of Global Optimization. ,vol. 11, pp. 341- 359 ,(1997) , 10.1023/A:1008202821328
Ramon Serrano, Juana M. Gancedo, Carlos Gancedo, Assay of yeast enzymes in situ. A potential tool in regulation studies. FEBS Journal. ,vol. 34, pp. 479- 482 ,(1973) , 10.1111/J.1432-1033.1973.TB02783.X
Ricardo A. Gomes, Marta Sousa Silva, Hugo Vicente Miranda, Antonio E. N. Ferreira, Carlos A. A. Cordeiro, Ana Ponces Freire, Protein glycation in Saccharomyces cerevisiae. Argpyrimidine formation and methylglyoxal catabolism. FEBS Journal. ,vol. 272, pp. 4521- 4531 ,(2005) , 10.1111/J.1742-4658.2005.04872.X
Norton Heise, Fred R. Opperdoes, Purification, localisation and characterisation of glucose-6-phosphate dehydrogenase of Trypanosoma brucei. Molecular and Biochemical Parasitology. ,vol. 99, pp. 21- 32 ,(1999) , 10.1016/S0166-6851(98)00176-5
C.A.A. Cordeiro, A.P. Freire, Protein determination in permeabilized yeast cells using the Coomassie brilliant blue dye binding assay. Analytical Biochemistry. ,vol. 223, pp. 321- 323 ,(1994) , 10.1006/ABIO.1994.1591
C. Cordeiro, A.P. Freire, Digitonin Permeabilization of Saccharomyces cerevisiae Cells for in Situ Enzyme Assay Analytical Biochemistry. ,vol. 229, pp. 145- 148 ,(1995) , 10.1006/ABIO.1995.1394
Ana Rute Neves, Ana Ramos, Marta C. Nunes, Michiel Kleerebezem, Jeroen Hugenholtz, Willem M. de Vos, Jonas Almeida, Helena Santos, In vivo nuclear magnetic resonance studies of glycolytic kinetics in Lactococcus lactis. Biotechnology and Bioengineering. ,vol. 64, pp. 200- 212 ,(1999) , 10.1002/(SICI)1097-0290(19990720)64:2<200::AID-BIT9>3.0.CO;2-K