Internal Ribosome Entry Site-Based Bicistronic In Situ Reporter Assays for Discovery of Transcription-Targeted Lead Compounds

作者: Liwei Lang , Han-Fei Ding , Xiaoguang Chen , Shi-Yong Sun , Gang Liu

DOI: 10.1016/J.CHEMBIOL.2015.06.009

关键词:

摘要: Summary Although transgene-based reporter gene assays have been used to discover small molecules targeting expression of cancer-driving genes, the success is limited due fact that regulated by incomplete cis -acting elements and foreign epigenetic environments does not faithfully reproduce chemical responses endogenous genes. Here, we present an internal ribosome entry site-based strategy for bicistronically co-expressing genes with in native locus, yielding in situ assay closely mimicking without disintegrating its function. This combines CRISPR-Cas9-mediated genome-editing tool recombinase-mediated cassette-exchange technology, allows rapid development orthogonal excluding false hits generated from primary screens. We validated this developing a screening platform identifying compounds oncogenic eIF4E, demonstrated novel are powerful searching transcription-targeted lead high confidence.

参考文章(40)
Patrick Martin, Olivier Albagli, Marie Poggi, KimE Boulukos, Philippe Pognonec, Development of a new bicistronic retroviral vector with strong IRES activity BMC Biotechnology. ,vol. 6, pp. 4- 4 ,(2006) , 10.1186/1472-6750-6-4
Jeremy R. Graff, Bruce W. Konicek, Thomas M. Vincent, Rebecca L. Lynch, David Monteith, Spring N. Weir, Phil Schwier, Andrew Capen, Robin L. Goode, Michele S. Dowless, Yuefeng Chen, Hong Zhang, Sean Sissons, Karen Cox, Ann M. McNulty, Stephen H. Parsons, Tao Wang, Lillian Sams, Sandaruwan Geeganage, Larry E. Douglass, Blake Lee Neubauer, Nicholas M. Dean, Kerry Blanchard, Jianyong Shou, Louis F. Stancato, Julia H. Carter, Eric G. Marcusson, Therapeutic suppression of translation initiation factor eIF4E expression reduces tumor growth without toxicity Journal of Clinical Investigation. ,vol. 117, pp. 2638- 2648 ,(2007) , 10.1172/JCI32044
F Ann Ran, Patrick D Hsu, Jason Wright, Vineeta Agarwala, David A Scott, Feng Zhang, Genome engineering using the CRISPR-Cas9 system Nature Protocols. ,vol. 8, pp. 2281- 2308 ,(2013) , 10.1038/NPROT.2013.143
Len A. Pennacchio, Wendy Bickmore, Ann Dean, Marcelo A. Nobrega, Gill Bejerano, Enhancers: five essential questions Nature Reviews Genetics. ,vol. 14, pp. 288- 295 ,(2013) , 10.1038/NRG3458
Fyodor D. Urnov, Edward J. Rebar, Michael C. Holmes, H. Steve Zhang, Philip D. Gregory, Genome editing with engineered zinc finger nucleases Nature Reviews Genetics. ,vol. 11, pp. 636- 646 ,(2010) , 10.1038/NRG2842
Natasha Thorne, James Inglese, Douglas S. Auld, Illuminating Insights into Firefly Luciferase and Other Bioluminescent Reporters Used in Chemical Biology Chemistry & Biology. ,vol. 17, pp. 646- 657 ,(2010) , 10.1016/J.CHEMBIOL.2010.05.012
Ken C-C Cheng, James Inglese, A coincidence reporter-gene system for high-throughput screening Nature Methods. ,vol. 9, pp. 937- 937 ,(2012) , 10.1038/NMETH.2170
Pablo de Felipe, Garry A. Luke, Lorraine E. Hughes, David Gani, Claire Halpin, Martin D. Ryan, E unum pluribus: multiple proteins from a self-processing polyprotein Trends in Biotechnology. ,vol. 24, pp. 68- 75 ,(2006) , 10.1016/J.TIBTECH.2005.12.006
Jeremy R. Graff, Bruce W. Konicek, Julia H. Carter, Eric G. Marcusson, Targeting the Eukaryotic Translation Initiation Factor 4E for Cancer Therapy Cancer Research. ,vol. 68, pp. 631- 634 ,(2008) , 10.1158/0008-5472.CAN-07-5635