Bacterial communication systems: A mathematical formulation of negative chemotaxis
作者： Konstantinos Kantelis , Georgios Papadimitriou
DOI: 10.1002/DAC.3365
关键词:
摘要: Summary The emergence of molecular communication (MC) has provided a new paradigm for at nanoscale, besides the electromagnetic one. Numerous biological systems have been proposed that could be used communication, using mostly bacteria as information carriers, ensuring biocompatibility and low complexity requirements. In this work, message dissemination dynamics in bacterial system was under investigation by means simulation framework designed developed based on commercial tool. A mathematical formulation is proposed, an effort to accurately predict system's behavior presence chemotactic-like nodes. Simulation results are strong agreement with respective model, wide range processes, including phenomena such chemotaxis, growth cycle, transformation dynamics. case simple scenario exhibiting mean accuracy improvement reaches values up 19%.
sci-hub.se 参考文章(51)
Mark James Abraham, Teemu Murtola, Roland Schulz, Szilárd Páll, Jeremy C. Smith, Berk Hess, Erik Lindahl, GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers SoftwareX. ,vol. 1, pp. 19- 25 ,(2015) , 10.1016/J.SOFTX.2015.06.001
Claire M. Fraser, Sherwood Casjens, Wai Mun Huang, Granger G. Sutton, Rebecca Clayton, Raju Lathigra, Owen White, Karen A. Ketchum, Robert Dodson, Erin K. Hickey, Michelle Gwinn, Brian Dougherty, Jean-Francois Tomb, Robert D. Fleischmann, Delwood Richardson, Jeremy Peterson, Anthony R. Kerlavage, John Quackenbush, Steven Salzberg, Mark Hanson, Rene van Vugt, Nanette Palmer, Mark D. Adams, Jeannine Gocayne, Janice Weidman, Teresa Utterback, Larry Watthey, Lisa McDonald, Patricia Artiach, Cheryl Bowman, Stacey Garland, Claire Fujii, Matthew D. Cotton, Kurt Horst, Kevin Roberts, Bonnie Hatch, Hamilton O. Smith, J. Craig Venter, Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi Nature. ,vol. 390, pp. 580- 586 ,(1997) , 10.1038/37551
R. G. Eagon, PSEUDOMONAS NATRIEGENS, A MARINE BACTERIUM WITH A GENERATION TIME OF LESS THAN 10 MINUTES Journal of Bacteriology. ,vol. 83, pp. 736- 737 ,(1962) , 10.1128/JB.83.4.736-737.1962
Konstantinos Kantelis, Stamatios A. Amanatiadis, Christos K. Liaskos, Nikolaos V. Kantartzis, Nikolaos Konofaos, Petros Nicopolitidis, Georgios I. Papadimitriou, On the Use of FDTD and Ray-Tracing Schemes in the Nanonetwork Environment IEEE Communications Letters. ,vol. 18, pp. 1823- 1826 ,(2014) , 10.1109/LCOMM.2014.2355197
Laurent Keller, Michael G. Surette, Communication in bacteria: an ecological and evolutionary perspective. Nature Reviews Microbiology. ,vol. 4, pp. 249- 258 ,(2006) , 10.1038/NRMICRO1383
Alper Rasim Cakir, Sema Oktug, A nanonetwork environment with messaging and humoral immunity-based database implementation Nano Communication Networks. ,vol. 1, pp. 189- 198 ,(2010) , 10.1016/J.NANCOM.2010.10.001
Sasitharan Balasubramaniam, Nikita Lyamin, Denis Kleyko, Mikael Skurnik, Alexey Vinel, Yevgeni Koucheryavy, Exploiting bacterial properties for multi-hop nanonetworks IEEE Communications Magazine. ,vol. 52, pp. 184- 191 ,(2014) , 10.1109/MCOM.2014.6852101
B. Fuchssteiner, W.X. Ma, Explicit and exact solutions to a Kolmogorov-Petrovskii-Piskunov equation International Journal of Non-linear Mechanics. ,vol. 31, pp. 329- 338 ,(1996) , 10.1016/0020-7462(95)00064-X
Thomas E Gorochowski, Antoni Matyjaszkiewicz, Thomas Todd, Neeraj Oak, Kira Kowalska, Stephen Reid, Krasimira T Tsaneva-Atanasova, Nigel J Savery, Claire S Grierson, Mario Di Bernardo, None, BSim: An Agent-Based Tool for Modeling Bacterial Populations in Systems and Synthetic Biology PLoS ONE. ,vol. 7, pp. e42790- ,(2012) , 10.1371/JOURNAL.PONE.0042790
Derya Malak, Ozgur B. Akan, Molecular communication nanonetworks inside human body Nano Communication Networks. ,vol. 3, pp. 19- 35 ,(2012) , 10.1016/J.NANCOM.2011.10.002