A Comprehensive Prescription for Plant miRNA Identification.

作者: Burcu Alptekin , Bala A. Akpinar , Hikmet Budak

DOI: 10.3389/FPLS.2016.02058

关键词:

摘要: … and pipelines are fewer for plants. Additionally, existing … of plant miRNAs since the miRNA mining process for plants is highly … in silico miRNA identification approach for plants, which …

参考文章(129)
Noah Fahlgren, James C. Carrington, miRNA Target Prediction in Plants. Methods of Molecular Biology. ,vol. 592, pp. 51- 57 ,(2010) , 10.1007/978-1-60327-005-2_4
Bala Ani Akpinar, Melda Kantar, Hikmet Budak, Root precursors of microRNAs in wild emmer and modern wheats show major differences in response to drought stress Functional & Integrative Genomics. ,vol. 15, pp. 587- 598 ,(2015) , 10.1007/S10142-015-0453-0
Hikmet Budak, B. Ani Akpinar, Plant miRNAs: biogenesis, organization and origins. Functional & Integrative Genomics. ,vol. 15, pp. 523- 531 ,(2015) , 10.1007/S10142-015-0451-2
Hidetaka Ito, Small RNAs and transposon silencing in plants Development, Growth & Differentiation. ,vol. 54, pp. 100- 107 ,(2012) , 10.1111/J.1440-169X.2011.01309.X
Isam Fattash, Rebecca Rooke, Amy Wong, Caleb Hui, Tina Luu, Priyanka Bhardwaj, Guojun Yang, Miniature inverted-repeat transposable elements: discovery, distribution, and activity. Genome. ,vol. 56, pp. 475- 486 ,(2013) , 10.1139/GEN-2012-0174
Shweta Mehrotra, Vinod Goyal, Repetitive Sequences in Plant Nuclear DNA: Types, Distribution, Evolution and Function Genomics, Proteomics & Bioinformatics. ,vol. 12, pp. 164- 171 ,(2014) , 10.1016/J.GPB.2014.07.003
Emily F. Finnegan, Amy E. Pasquinelli, MicroRNA biogenesis: Regulating the Regulators Critical Reviews in Biochemistry and Molecular Biology. ,vol. 48, pp. 51- 68 ,(2013) , 10.3109/10409238.2012.738643
S. Tam, M.-S. Tsao, J. D. McPherson, Optimization of miRNA-seq data preprocessing Briefings in Bioinformatics. ,vol. 16, pp. 950- 963 ,(2015) , 10.1093/BIB/BBV019