Fast-Find: A novel computational approach to analyzing combinatorial motifs

作者: Micah Hamady , Erin Peden , Rob Knight , Ravinder Singh

DOI: 10.1186/1471-2105-7-1

关键词:

摘要: Background Many vital biological processes, including transcription and splicing, require a combination of short, degenerate sequence patterns, or motifs, adjacent to defined features. Although these motifs occur frequently by chance, they only have meaning within specific context. Identifying transcripts that contain meaningful combinations patterns is thus an important problem, which existing tools address poorly.

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