The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data.
作者： J. R. Cole , B. Chai , R. J. Farris , Q. Wang , A. S. Kulam-Syed-Mohideen
DOI: 10.1093/NAR/GKL889
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摘要: … their own data in context with the RDP's data. In addition, new video tutorials describe how … use RDP features. Details about RDP data and analytical functions can be found at the RDP…
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Michael P. S. Brown, Small Subunit Ribosomal RNA Modeling Using Stochastic Context-Free Grammars intelligent systems in molecular biology. ,vol. 8, pp. 57- 66 ,(2000)
H.-H. Chou, M. H. Holmes, DNA sequence quality trimming and vector removal Bioinformatics. ,vol. 17, pp. 1093- 1104 ,(2001) , 10.1093/BIOINFORMATICS/17.12.1093
Joseph Felsenstein, Evolutionary trees from DNA sequences: A maximum likelihood approach Journal of Molecular Evolution. ,vol. 17, pp. 368- 376 ,(1981) , 10.1007/BF01734359
S. McGinnis, T. L. Madden, BLAST: at the core of a powerful and diverse set of sequence analysis tools Nucleic Acids Research. ,vol. 32, pp. 20- 25 ,(2004) , 10.1093/NAR/GKH435
William J. Bruno, Nicholas D. Socci, Aaron L. Halpern, Weighted Neighbor Joining: A Likelihood-Based Approach to Distance-Based Phylogeny Reconstruction Molecular Biology and Evolution. ,vol. 17, pp. 189- 197 ,(2000) , 10.1093/OXFORDJOURNALS.MOLBEV.A026231
Gary J. Olsen, Hideo Matsuda, Ray Hagstrom, Ross Overbeek, fastDNAml: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood Bioinformatics. ,vol. 10, pp. 41- 48 ,(1994) , 10.1093/BIOINFORMATICS/10.1.41
James R Cole, Benli Chai, Ryan J Farris, Qiong Wang, SA Kulam, Donna M McGarrell, George M Garrity, James M Tiedje, The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis Nucleic Acids Research. ,vol. 33, pp. D294- D296 ,(2004) , 10.1093/NAR/GKI038
Brent Ewing, Phil Green, Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities Genome Research. ,vol. 8, pp. 186- 194 ,(1998) , 10.1101/GR.8.3.186
Brent Ewing, LaDeana Hillier, Michael C. Wendl, Phil Green, Base-calling of automated sequencer traces using Phred. I. accuracy assessment Genome Research. ,vol. 8, pp. 175- 185 ,(1998) , 10.1101/GR.8.3.175
Jamie J Cannone, Sankar Subramanian, Murray N Schnare, James R Collett, Lisa M D'Souza, Yushi Du, Brian Feng, Nan Lin, Lakshmi V Madabusi, Kirsten M Müller, Nupur Pande, Zhidi Shang, Nan Yu, Robin R Gutell, The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs BMC Bioinformatics. ,vol. 3, pp. 2- 2 ,(2002) , 10.1186/1471-2105-3-2