Neuroproteomics of the Synapse: Subcellular Quantification of Protein Networks and Signaling Dynamics.

作者: Maarten Altelaar , Charlotte A.G.H. van Gelder

DOI: 10.1016/J.MCPRO.2021.100087

关键词:

摘要: One of the most fascinating features brain is its ability to adapt surroundings. Synaptic plasticity, dynamic mechanism functional and structural alterations in synaptic strength, essential for functioning underlies a variety processes such as learning memory. While molecular mechanisms underlying rapid plasticity are not fully understood, consensus exists on important role proteins. The study these neuronal proteins using neuroproteomics has increased rapidly last decades, advancements mass spectrometry-based proteomics have broadened our understanding neuroplasticity exponentially. In this review, we discuss trends protein-protein interactions protein signaling dynamics, with focus sample types, different labeling enrichment approaches data analysis interpretation. We highlight studies from five years, synapse structure, composition, functioning, or signaling, finally some recent developments that could further advance field neuroproteomics.

参考文章(158)
Matthew E. Klein, Pablo E. Castillo, Bryen A. Jordan, Coordination between Translation and Degradation Regulates Inducibility of mGluR-LTD Cell Reports. ,vol. 10, pp. 1459- 1466 ,(2015) , 10.1016/J.CELREP.2015.02.020
Ute Distler, Michael J. Schmeisser, Assunta Pelosi, Dominik Reim, Jörg Kuharev, Roland Weiczner, Jan Baumgart, Tobias M. Boeckers, Robert Nitsch, Johannes Vogt, Stefan Tenzer, In-depth protein profiling of the postsynaptic density from mouse hippocampus using data-independent acquisition proteomics. Proteomics. ,vol. 14, pp. 2607- 2613 ,(2014) , 10.1002/PMIC.201300520
Sergiu P Paşca, Thomas Portmann, Irina Voineagu, Masayuki Yazawa, Aleksandr Shcheglovitov, Anca M Paşca, Branden Cord, Theo D Palmer, Sachiko Chikahisa, Seiji Nishino, Jonathan A Bernstein, Joachim Hallmayer, Daniel H Geschwind, Ricardo E Dolmetsch, Using iPSC-derived neurons to uncover cellular phenotypes associated with Timothy syndrome Nature Medicine. ,vol. 17, pp. 1657- 1662 ,(2011) , 10.1038/NM.2576
Yingsha Zhang, ChangHui Pak, Yan Han, Henrik Ahlenius, Zhenjie Zhang, Soham Chanda, Samuele Marro, Christopher Patzke, Claudio Acuna, Jason Covy, Wei Xu, Nan Yang, Tamas Danko, Lu Chen, Marius Wernig, Thomas C. Südhof, Rapid Single-Step Induction of Functional Neurons from Human Pluripotent Stem Cells Neuron. ,vol. 78, pp. 785- 798 ,(2013) , 10.1016/J.NEURON.2013.05.029
Peter V. Hornbeck, Bin Zhang, Beth Murray, Jon M. Kornhauser, Vaughan Latham, Elzbieta Skrzypek, PhosphoSitePlus, 2014: mutations, PTMs and recalibrations Nucleic Acids Research. ,vol. 43, pp. 512- 520 ,(2015) , 10.1093/NAR/GKU1267
Junmin Peng, Myung Jong Kim, Dongmei Cheng, Duc M Duong, Steven P Gygi, Morgan Sheng, None, Semiquantitative proteomic analysis of rat forebrain postsynaptic density fractions by mass spectrometry Journal of Biological Chemistry. ,vol. 279, pp. 21003- 21011 ,(2004) , 10.1074/JBC.M400103200
Laurie D. Cohen, Rina Zuchman, Oksana Sorokina, Anke Müller, Daniela C. Dieterich, J. Douglas Armstrong, Tamar Ziv, Noam E. Ziv, Metabolic Turnover of Synaptic Proteins: Kinetics, Interdependencies and Implications for Synaptic Maintenance PLoS ONE. ,vol. 8, pp. e63191- ,(2013) , 10.1371/JOURNAL.PONE.0063191
Rujun Kang, Junmei Wan, Pamela Arstikaitis, Hideto Takahashi, Kun Huang, Aaron O. Bailey, James X. Thompson, Amy F. Roth, Renaldo C. Drisdel, Ryan Mastro, William N. Green, John R. Yates III, Nicholas G. Davis, Alaa El-Husseini, Neural palmitoyl-proteomics reveals dynamic synaptic palmitoylation Nature. ,vol. 456, pp. 904- 909 ,(2008) , 10.1038/NATURE07605
Cyril Hanus, Erin M. Schuman, Proteostasis in complex dendrites Nature Reviews Neuroscience. ,vol. 14, pp. 638- 648 ,(2013) , 10.1038/NRN3546
Ayse Dosemeci, Anthony J. Makusky, Ewa Jankowska-Stephens, Xiaoyu Yang, Douglas J. Slotta, Sanford P. Markey, Composition of the Synaptic PSD-95 Complex Molecular & Cellular Proteomics. ,vol. 6, pp. 1749- 1760 ,(2007) , 10.1074/MCP.M700040-MCP200