Short Interspersed Repetitive Sequences as a Phylogenetic Tool

作者: DA Kramerov , NS Vasetskii , None

DOI: 10.1134/S0026893309050057

关键词:

摘要: The review is dedicated to one of the most common classes repetitive elements in eukaryotic genomes: short interspersed elements. Their structure, origin, and functioning genome are discussed. variation abundance these neutral genomic markers make them a convenient reliable tool for phylogenetic analysis. main methods such analysis outlined, potential limitations this approach illustrated by examples.

参考文章(76)
D.A. Kramerov, I.V. Lekakh, O.P. Samarina, A.P. Ryskov, The sequences homologous to major interspersed repeats B1 and B2 of mouse genome are present in mRNA and small cytoplasmic poty(A)+RNA Nucleic Acids Research. ,vol. 10, pp. 7477- 7491 ,(1982) , 10.1093/NAR/10.23.7477
Dongmei D. Luan, Malka H. Korman, John L. Jakubczak, Thomas H. Eickbush, Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition Cell. ,vol. 72, pp. 595- 605 ,(1993) , 10.1016/0092-8674(93)90078-5
Irina K. Gogolevskaya, Anastasia P. Koval, Dmitri A. Kramerov, Evolutionary History of 4.5SH RNA Molecular Biology and Evolution. ,vol. 22, pp. 1546- 1554 ,(2005) , 10.1093/MOLBEV/MSI140
A. BANNIKOVA, N.S. BULATOVA, E.Y. KRYSANOV, D.A. KRAMEROV, DNA polymorphism within Sorex araneus and two congeneric species as inferred from inter-SINE-PCR Mammalia. ,vol. 67, pp. 263- 274 ,(2003) , 10.1515/MAMM.2003.67.2.263
Nika Lovšin, Franc Gubenšek, Dušan Kordi, Evolutionary Dynamics in a Novel L2 Clade of Non-LTR Retrotransposons in Deuterostomia Molecular Biology and Evolution. ,vol. 18, pp. 2213- 2224 ,(2001) , 10.1093/OXFORDJOURNALS.MOLBEV.A003768
Jan Ole Kriegs, Gennady Churakov, Jerzy Jurka, Jürgen Brosius, Jürgen Schmitz, Evolutionary history of 7SL RNA-derived SINEs in Supraprimates. Trends in Genetics. ,vol. 23, pp. 158- 161 ,(2007) , 10.1016/J.TIG.2007.02.002
D. Kordis̆, F. Gubens̆ek, Horizontal SINE transfer between vertebrate classes Nature Genetics. ,vol. 10, pp. 131- 132 ,(1995) , 10.1038/NG0695-131
Irina M. Serdobova, Dmitri A. Kramerov, Short retroposons of the B2 superfamily: evolution and application for the study of rodent phylogeny. Journal of Molecular Evolution. ,vol. 46, pp. 202- 214 ,(1998) , 10.1007/PL00006295