Genetic and genomic monitoring with minimally invasive sampling methods

作者: Emma L. Carroll , Mike W. Bruford , J. Andrew DeWoody , Gregoire Leroy , Alan Strand

DOI: 10.1111/EVA.12600

关键词:

摘要: The decreasing cost and increasing scope power of emerging genomic technologies are reshaping the field molecular ecology. However, many modern approaches (e.g., RAD‐seq) require large amounts high‐quality template DNA. This poses a problem for an active branch conservation biology: genetic monitoring using minimally invasive sampling (MIS) methods. Without handling or even observing animal, MIS methods collection hair, skin, faeces) can provide information on individuals populations. Such samples typically yield low‐quality and/or quantities DNA, restricting type that be used. Despite this limitation, is effective tool estimating population demographic parameters diversity in natural Genetic likely to become more important future as populations undergoing anthropogenically driven declines, which unlikely abate without intensive adaptive management efforts often include approaches. Here, we profile expanding suite platforms compatible with producing genotypes from MIS, considering factors such development costs error rates. We evaluate how powerful newquestions answered monitoring, abundance, structure relatedness. As period unusually rapid transition, also highlight importance legacy data sets recommend address challenges moving between traditional next‐generation platforms. Finally, consider could move beyond future. For example, assessing microbiomes epigenetic markers greater understanding relationship their environment. will enhance our ability investigate

参考文章(271)
GEORGE H. PERRY, JOHN C. MARIONI, PÁLL MELSTED, YOAV GILAD, Genomic-scale capture and sequencing of endogenous DNA from feces. Molecular Ecology. ,vol. 19, pp. 5332- 5344 ,(2010) , 10.1111/J.1365-294X.2010.04888.X
M. DE BARBA, L. P. WAITS, E. O. GARTON, P. GENOVESI, E. RANDI, A. MUSTONI, C. GROFF, The power of genetic monitoring for studying demography, ecology and genetics of a reintroduced brown bear population Molecular Ecology. ,vol. 19, pp. 3938- 3951 ,(2010) , 10.1111/J.1365-294X.2010.04791.X
SARAH L. MESNICK, BARBARA L. TAYLOR, FREDERICK I. ARCHER, KAREN K. MARTIEN, SERGIO ESCORZA TREVIÑO, BRITTANY L. HANCOCK-HANSER, SANDRA CAROLINA MORENO MEDINA, VICTORIA L. PEASE, KELLY M. ROBERTSON, JANICE M. STRALEY, ROBIN W. BAIRD, JOHN CALAMBOKIDIS, GREGORY S. SCHORR, PAUL WADE, VLADIMIR BURKANOV, CHRIS R. LUNSFORD, LUKE RENDELL, PHILLIP A. MORIN, Sperm whale population structure in the eastern and central North Pacific inferred by the use of single-nucleotide polymorphisms, microsatellites and mitochondrial DNA Molecular Ecology Resources. ,vol. 11, pp. 278- 298 ,(2011) , 10.1111/J.1755-0998.2010.02973.X
A. Goncalves da Silva, D. R. Lalonde, V. Quse, A. Shoemaker, M. A. Russello, Genetic Approaches Refine Ex Situ Lowland Tapir (Tapirus terrestris) Conservation Journal of Heredity. ,vol. 101, pp. 581- 590 ,(2010) , 10.1093/JHERED/ESQ055
Anita J. Norman, Göran Spong, Single nucleotide polymorphism‐based dispersal estimates using noninvasive sampling Ecology and Evolution. ,vol. 5, pp. 3056- 3065 ,(2015) , 10.1002/ECE3.1588
Jacque C. Young, Chongle Pan, Rachel M. Adams, Brandon Brooks, Jillian F. Banfield, Michael J. Morowitz, Robert L. Hettich, Metaproteomics reveals functional shifts in microbial and human proteins during a preterm infant gut colonization case Proteomics. ,vol. 15, pp. 3463- 3473 ,(2015) , 10.1002/PMIC.201400563
Robert J. Elshire, Jeffrey C. Glaubitz, Qi Sun, Jesse A. Poland, Ken Kawamoto, Edward S. Buckler, Sharon E. Mitchell, A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species PLoS ONE. ,vol. 6, pp. e19379- ,(2011) , 10.1371/JOURNAL.PONE.0019379
JEREMY D. DIXON, MADAN K. OLI, MICHAEL C. WOOTEN, THOMAS H. EASON, J. WALTER McCOWN, DAVID PAETKAU, Effectiveness of a regional corridor in connecting two Florida black bear populations Conservation Biology. ,vol. 20, pp. 155- 162 ,(2006) , 10.1111/J.1523-1739.2005.00292.X
Mark F. Haussmann, Carol M. Vleck, Ian C.T. Nisbet, Calibrating the telomere clock in common terns, Sterna hirundo Experimental Gerontology. ,vol. 38, pp. 787- 789 ,(2003) , 10.1016/S0531-5565(03)00109-8
J. L. STENGLEIN, M. DE BARBA, D. E. AUSBAND, L. P. WAITS, Impacts of sampling location within a faeces on DNA quality in two carnivore species. Molecular Ecology Resources. ,vol. 10, pp. 109- 114 ,(2010) , 10.1111/J.1755-0998.2009.02670.X