Selection and validation of reference genes for gene expression studies in Klebsiella pneumoniae using Reverse Transcription Quantitative real-time PCR.

作者: Ana Érika Inácio Gomes , Leonardo Prado Stuchi , Nathália Maria Gonçalves Siqueira , João Batista Henrique , Renato Vicentini

DOI: 10.1038/S41598-018-27420-2

关键词:

摘要: For reliable results, Reverse Transcription Quantitative real-time Polymerase Chain Reaction (RT-qPCR) analyses depend on stably expressed reference genes for data normalization purposes. Klebsiella pneumoniae is an opportunistic Gram-negative bacterium that has become a serious threat worldwide. Unfortunately, there no consensus ideal gene RT-qPCR K. pneumoniae. In this study, the expression profile of eleven candidate was assessed in cells submitted to various experimental conditions, and stability these evaluated using statistical algorithms BestKeeper, NormFinder, geNorm, Delta CT RefFinder. The ranked recA, rho, proC rpoD as most suitable accurate reliability proposed validated by normalizing relative iron-regulated iron-replete iron-limited conditions. This work emphasizes stable any potential must be each physiological condition or treatment under study.

参考文章(75)
Péricles S. Galisa, Helder A.P. da Silva, Aline V.M. Macedo, Verônica M. Reis, Márcia S. Vidal, José I. Baldani, Jean L. Simões-Araújo, Identification and validation of reference genes to study the gene expression in Gluconacetobacter diazotrophicus grown in different carbon sources using RT-qPCR. Journal of Microbiological Methods. ,vol. 91, pp. 1- 7 ,(2012) , 10.1016/J.MIMET.2012.07.005
Hu Zhu, Hui-Jun Liu, Shou-Jiao Ning, Yu-Li Gao, The response of type 2 quorum sensing in Klebsiella pneumoniae to a fluctuating culture environment. DNA and Cell Biology. ,vol. 31, pp. 455- 459 ,(2012) , 10.1089/DNA.2011.1375
Devon Metcalf, Shayan Sharif, J. Scott Weese, Evaluation of candidate reference genes in Clostridium difficile for gene expression normalization. Anaerobe. ,vol. 16, pp. 439- 443 ,(2010) , 10.1016/J.ANAEROBE.2010.06.007
Cécilia De Araujo, Damien Balestrino, Lucile Roth, Nicolas Charbonnel, Christiane Forestier, Quorum sensing affects biofilm formation through lipopolysaccharide synthesis in Klebsiella pneumoniae Research in Microbiology. ,vol. 161, pp. 595- 603 ,(2010) , 10.1016/J.RESMIC.2010.05.014
Ji Yang, Jonathan J. Wilksch, Jason W. H. Tan, Dianna M. Hocking, Chaille T. Webb, Trevor Lithgow, Roy M. Robins-Browne, Richard A. Strugnell, Transcriptional Activation of the mrkA Promoter of the Klebsiella pneumoniae Type 3 Fimbrial Operon by the c-di-GMP-Dependent MrkH Protein PLoS ONE. ,vol. 8, pp. e79038- 10 ,(2013) , 10.1371/JOURNAL.PONE.0079038
Lucía Escolar, Jose Pérez-Martín, Víctor de Lorenzo, Opening the Iron Box: Transcriptional Metalloregulation by the Fur Protein Journal of Bacteriology. ,vol. 181, pp. 6223- 6229 ,(1999) , 10.1128/JB.181.20.6223-6229.1999