Seascape genomics reveals candidate molecular targets of heat stress adaptation in three coral species

作者: Oliver Selmoni , Gaël Lecellier , Hélène Magalon , Laurent Vigliola , Francesca Benzoni

DOI: 10.1101/2020.05.12.090050

关键词:

摘要: Anomalous heat waves are causing a major decline of hard corals around the world and threatening persistence coral reefs. There are, however, reefs that had been exposed to recurrent thermal stress over years whose appeared tolerant against heat. One mechanisms could explain this phenomenon is local adaptation, but underlying molecular poorly known. In work, we applied seascape genomics approach study adaptation in three species New Caledonia (southwestern Pacific) uncover actors potentially involved. We used remote sensing data characterize environmental trends across reef system, sampled living at most contrasted sites. These samples underwent next generation sequencing reveal single-nucleotide-polymorphisms (SNPs) which frequencies associated with gradients. As these SNPs might underpin an adaptive role, characterized functional roles genes located their genomic neighborhood. each studied species, found notably proximity coding for well-established cellular responses Among these, can mention proteins involved DNA damage-repair, protein folding, oxidative homeostasis, inflammatory apoptotic pathways. some cases, same putative targets recurred among species. Together, results underscore relevance power discovery traits allow persist wider ranges.

参考文章(100)
Terry P. Hughes, James T. Kerry, Sean R. Connolly, Andrew H. Baird, C. Mark Eakin, Scott F. Heron, Andrew S. Hoey, Mia O. Hoogenboom, Mizue Jacobson, Gang Liu, Morgan S. Pratchett, William Skirving, Gergely Torda, Ecological memory modifies the cumulative impact of recurrent climate extremes Nature Climate Change. ,vol. 9, pp. 40- 43 ,(2019) , 10.1038/S41558-018-0351-2
Parysatis Sachs, Dong Ding, Philipp Bergmaier, Boris Lamp, Christina Schlagheck, Florian Finkernagel, Andrea Nist, Thorsten Stiewe, Jacqueline E. Mermoud, SMARCAD1 ATPase activity is required to silence endogenous retroviruses in embryonic stem cells. Nature Communications. ,vol. 10, pp. 1335- ,(2019) , 10.1038/S41467-019-09078-0
Oliver Selmoni, Elia Vajana, Annie Guillaume, Estelle Rochat, Stéphane Joost, Sampling strategy optimization to increase statistical power in landscape genomics: A simulation-based approach. Molecular Ecology Resources. ,vol. 20, pp. 154- 169 ,(2020) , 10.1111/1755-0998.13095
Zachary L. Fuller, Veronique J.L. Mocellin, Luke Morris, Neal Cantin, Jihanne Shepherd, Luke Sarre, Julie Peng, Yi Liao, Joseph Pickrell, Peter Andolfatto, Mikhail Matz, Line K. Bay, Molly Przeworski, Population genetics of the coral Acropora millepora: Towards a genomic predictor of bleaching bioRxiv. pp. 867754- ,(2019) , 10.1101/867754
Oliver Selmoni, Estelle Rochat, Gael Lecellier, Veronique Berteaux‐Lecellier, Stéphane Joost, Seascape genomics as a new tool to empower coral reef conservation strategies: an example on north‐western Pacific Acropora digitifera Evolutionary Applications. ,vol. 13, pp. 1923- 1938 ,(2020) , 10.1111/EVA.12944
Ma Li Xin Li Na, Comparative analysis ,(2019)
Andrzej Kilian, Peter Wenzl, Eric Huttner, Jason Carling, Ling Xia, Hélène Blois, Vanessa Caig, Katarzyna Heller-Uszynska, Damian Jaccoud, Colleen Hopper, Malgorzata Aschenbrenner-Kilian, Margaret Evers, Kaiman Peng, Cyril Cayla, Puthick Hok, Grzegorz Uszynski, Diversity Arrays Technology: A Generic Genome Profiling Technology on Open Platforms Data Production and Analysis in Population Genomics. ,vol. 888, pp. 67- 89 ,(2012) , 10.1007/978-1-61779-870-2_5