CDMetaPOP: an individual‐based, eco‐evolutionary model for spatially explicit simulation of landscape demogenetics

作者: Erin L Landguth , Andrew Bearlin , Casey C Day , Jason Dunham , Justin Travis

DOI: 10.1111/2041-210X.12608

关键词:

摘要: Summary Combining landscape demographic and genetics models offers powerful methods for addressing questions eco-evolutionary applications. Using two illustrative examples, we present Cost–Distance Meta-POPulation, a program to simulate changes in neutral and/or selection-driven genotypes through time as function of individual-based movement, complex spatial population dynamics, multiple changing drivers. Cost–Distance Meta-POPulation provides novel tool by incorporating viability analysis, while linking directly conservation applications.

参考文章(56)
Ilkka Hanski, Daniel Simberloff, The Metapopulation Approach, Its History, Conceptual Domain, and Application to Conservation Metapopulation Biology#R##N#Ecology, Genetics, and Evolution. pp. 5- 26 ,(1997) , 10.1016/B978-012323445-2/50003-1
Lise Bach Hansen, Hans Redlef Siegismund, Rikke Bagger Jørgensen, Introgression between oilseed rape (Brassica napus L.) and its weedy relative B. rapa L. in a natural population Genetic Resources and Crop Evolution. ,vol. 48, pp. 621- 627 ,(2001) , 10.1023/A:1013825816443
Béatrice M. Frank, John J. Piccolo, Philippe V. Baret, A review of ecological models for brown trout: towards a new demogenetic model Ecology of Freshwater Fish. ,vol. 20, pp. 167- 198 ,(2011) , 10.1111/J.1600-0633.2011.00491.X
Michelle M. McClure, Stephanie M. Carlson, Timothy J. Beechie, George R. Pess, Jeffrey C. Jorgensen, Susan M. Sogard, Sonia E. Sultan, Damon M. Holzer, Joseph Travis, Beth L. Sanderson, Mary E. Power, Richard W. Carmichael, Evolutionary consequences of habitat loss for Pacific anadromous salmonids Evolutionary Applications. ,vol. 1, pp. 300- 318 ,(2008) , 10.1111/J.1752-4571.2008.00030.X
William I. Atlas, Thomas W. Buehrens, Don J.F. McCubbing, Robert Bison, Jonathan W. Moore, Implications of spatial contraction for density dependence and conservation in a depressed population of anadromous fish Canadian Journal of Fisheries and Aquatic Sciences. ,vol. 72, pp. 1682- 1693 ,(2015) , 10.1139/CJFAS-2014-0532
KURT D. FAUSCH, CHRISTIAN E. TORGERSEN, COLDEN V. BAXTER, HIRAM W. LI, Landscapes to Riverscapes: Bridging the Gap between Research and Conservation of Stream Fishes BioScience. ,vol. 52, pp. 483- 498 ,(2002) , 10.1641/0006-3568(2002)052[0483:LTRBTG]2.0.CO;2
ERIN L. LANDGUTH, S. A. CUSHMAN, cdpop: A spatially explicit cost distance population genetics program. Molecular Ecology Resources. ,vol. 10, pp. 156- 161 ,(2010) , 10.1111/J.1755-0998.2009.02719.X
Erin L Landguth, Samuel A Cushman, Michael K Schwartz, Kevin S McKelvey, M Murphy, G Luikart, None, Quantifying the lag time to detect barriers in landscape genetics Molecular Ecology. ,vol. 19, pp. 4179- 4191 ,(2010) , 10.1111/J.1365-294X.2010.04808.X
Mary M. Peacock, Ned A. Dochtermann, Evolutionary potential but not extinction risk of Lahontan cutthroat trout (Oncorhynchus clarkii henshawi) is associated with stream characteristics Canadian Journal of Fisheries and Aquatic Sciences. ,vol. 69, pp. 615- 626 ,(2012) , 10.1139/F2012-006