Marine Metagenome and Supporting Technology

作者: Tetsushi Mori , Haruko Takeyama

DOI: 10.1007/978-3-642-53971-8_19

关键词:

摘要: Bacteria are known to be highly diverse and unique the various environments they reside in. Covering more than 70 % Open image in new window of earth’s surface, marine bacterial ecosystems particular have long been regarded as reservoirs for novel genes important industry pharmaceutics. In first part chapter, we reviewed importance potential bacteria from an genetic resource some recent efforts implementation metagenomic research screen applicable bioprocesses, bioremediation bioethanol production. Nevertheless, has also provided challenges that will need addressed order use these resources efficiently. Here, second introduced several supporting technologies show great assisting overcome such including high-throughput screening using microfluidics, single-cell analysis silico data mining data. The introduction technologies, with research, does not only allowed us exploit fullest but may provide perspectives insights towards living organisms natural ecosystems.

参考文章(78)
T. Tomoyasu, J. Gamer, B. Bukau, M. Kanemori, H. Mori, A.J. Rutman, A.B. Oppenheim, T. Yura, K. Yamanaka, H. Niki, Escherichia coli FtsH is a membrane-bound, ATP-dependent protease which degrades the heat-shock transcription factor sigma 32. The EMBO Journal. ,vol. 14, pp. 2551- 2560 ,(1995) , 10.1002/J.1460-2075.1995.TB07253.X
Li Zhang, Zhihong Xu, Assessing bacterial diversity in soil: A brief review Journal of Soils and Sediments. ,vol. 8, pp. 379- 388 ,(2008) , 10.1007/S11368-008-0043-Z
K. Zengler, G. Toledo, M. Rappe, J. Elkins, E. J. Mathur, J. M. Short, M. Keller, Cultivating the uncultured Proceedings of the National Academy of Sciences of the United States of America. ,vol. 99, pp. 15681- 15686 ,(2002) , 10.1073/PNAS.252630999
Zygmunt S. Derewenda, Jia Li, Urszula Derewenda, Zbigniew Dauter, Stuart Smith, Crystal structure of the Escherichia coli thioesterase II, a homolog of the human Nef binding enzyme. Nature Structural & Molecular Biology. ,vol. 7, pp. 555- 559 ,(2000) , 10.1038/76776
P. Das, S. Mukherjee, R. Sen, Antimicrobial potential of a lipopeptide biosurfactant derived from a marine Bacillus circulans Journal of Applied Microbiology. ,vol. 104, pp. 1675- 1684 ,(2008) , 10.1111/J.1365-2672.2007.03701.X
Ana-Belen Martin-Cuadrado, Francisco Rodriguez-Valera, David Moreira, José C Alba, Elena Ivars-Martínez, Matthew R Henn, Emmanuel Talla, Purificación López-García, Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions. The ISME Journal. ,vol. 2, pp. 865- 886 ,(2008) , 10.1038/ISMEJ.2008.40
Yoshiko Okamura, Tomonori Kimura, Hiroko Yokouchi, Macarena Meneses-Osorio, Masaya Katoh, Tadashi Matsunaga, Haruko Takeyama, Isolation and characterization of a GDSL esterase from the metagenome of a marine sponge-associated bacteria. Marine Biotechnology. ,vol. 12, pp. 395- 402 ,(2010) , 10.1007/S10126-009-9226-X
Alexander I Culley, Andrew S Lang, Curtis A Suttle, Metagenomic Analysis of Coastal RNA Virus Communities Science. ,vol. 312, pp. 1795- 1798 ,(2006) , 10.1126/SCIENCE.1127404
Kunshan Gao, Kelton R. McKinley, Use of macroalgae for marine biomass production and CO2 remediation: a review Journal of Applied Phycology. ,vol. 6, pp. 45- 60 ,(1994) , 10.1007/BF02185904