Ab initio SCF and force-field calculations on low-energy conformers of 2-acetylamino-2,N-dimethylpropanamide

作者: Carlos Alemán , Jordi Casanovas

DOI: 10.1039/P29940000563

关键词:

摘要: The understanding of the conformational properties α,α-disubstituted amino acids is related to design structural mimics for proteins. More specifically, 2-amino-2-methylpropanoic acid has been widely used in constructing helical peptide modules. In this paper, we report results ab initio SCF calculations with 3-21G, 6-31G* and 6-31G** basis sets on four low-energy conformations 2-acetylamino-2,N-dimethylpropanamide. are assess reliability empirical potentials force-field methodologies. For purpose, averaged multiple conformations' atomic point charges were determined 6-31 G* set. some important deficiencies current force-fields. Thus, relative energies dipeptide excessive repulsive or attractive interactions not well described by potentials.

参考文章(66)
Christopher A. Reynolds, Jonathan W. Essex, W. Graham Richards, Atomic charges for variable molecular conformations Journal of the American Chemical Society. ,vol. 114, pp. 9075- 9079 ,(1992) , 10.1021/JA00049A045
F. J. Luque, M. Orozco, F. Illas, J. Rubio, Effect of electron correlation on the electrostatic potential distribution of molecules Journal of the American Chemical Society. ,vol. 113, pp. 5203- 5211 ,(1991) , 10.1021/JA00014A010
Kuo-Chen Chou, George Némethy, Marcia Pottle, Harold A Scheraga, Energy of stabilization of the right-handed βαβ crossover in proteins Journal of Molecular Biology. ,vol. 205, pp. 241- 249 ,(1989) , 10.1016/0022-2836(89)90378-1
Scott J. Weiner, Peter A. Kollman, David A. Case, U. Chandra Singh, Caterina Ghio, Guliano Alagona, Salvatore Profeta, Paul Weiner, A NEW FORCE FIELD FOR MOLECULAR MECHANICAL SIMULATION OF NUCLEIC ACIDS AND PROTEINS Journal of the American Chemical Society. ,vol. 106, pp. 765- 784 ,(1984) , 10.1021/JA00315A051
Yvonne Paterson, Shirley M. Rumsey, Ettore Benedetti, George Nemethy, Harold A. Scheraga, Sensitivity of polypeptide conformation to geometry. Theoretical conformational analysis of oligomers of .alpha.-aminoisobutyric acid Journal of the American Chemical Society. ,vol. 103, pp. 2947- 2955 ,(1981) , 10.1021/JA00401A007
Pietro Amodeo, Vincenzo Barone, A new general form of molecular force fields. Application to intra- and interresidue interactions in peptides Journal of the American Chemical Society. ,vol. 114, pp. 9085- 9093 ,(1992) , 10.1021/JA00049A047
Jan H. Jensen, Mark S. Gordon, The conformational potential energy surface of glycine : a theoretical study Journal of the American Chemical Society. ,vol. 113, pp. 7917- 7924 ,(1991) , 10.1021/JA00021A015
J. Mavri, F. Avbelj, D. Hadži, Conformation of N-acetyl-l-pro-d-ala-N-methyl tripeptide empirical, semi-empirical MO and AB initio MO calculations Journal of Molecular Structure-theochem. ,vol. 187, pp. 307- 315 ,(1989) , 10.1016/0166-1280(89)85171-1
Isabella L. Karle, Padmanabhan Balaram, Structural characteristics of .alpha.-helical peptide molecules containing Aib residues Biochemistry. ,vol. 29, pp. 6747- 6756 ,(1990) , 10.1021/BI00481A001