YeastFab: the design and construction of standard biological parts for metabolic engineering in Saccharomyces cerevisiae.

作者: Yakun Guo , Junkai Dong , Tong Zhou , Jamie Auxillos , Tianyi Li

DOI: 10.1093/NAR/GKV464

关键词:

摘要: It is a routine task in metabolic engineering to introduce multicomponent pathways into heterologous host for production of metabolites. However, this process sometimes may take weeks months due the lack standardized genetic tools. Here, we present method design and construction biological parts based on native genes regulatory elements Saccharomyces cerevisiae. We have developed highly efficient protocols (termed YeastFab Assembly) synthesize these as parts, which can be used assemble transcriptional units single-tube reaction. In addition, characterization assays are using reporter constructs calibrate function promoters. Furthermore, assembled transcription either assayed individually or applied construct multi-gene pathways, targets genomic locus receiving plasmid effectively, through simple vitro Finally, β-carotene biosynthesis pathway an example, demonstrate that our allows us not only test several days, but also optimize combinatorial assembly hundreds parts.

参考文章(50)
Y L Wu, Y Li, How Chinese scientists discovered qinghaosu (artemisinin) and developed its derivatives? What are the future perspectives? Médecine tropicale : revue du Corps de santé colonial. ,vol. 58, pp. 9- 12 ,(1998)
Tom Knight, Idempotent Vector Design for Standard Assembly of Biobricks MIT Artificial Intelligence Laboratory; MIT Synthetic Biology Working Group. ,(2003) , 10.21236/ADA457791
Zengyi Shao, Hua Zhao, Huimin Zhao, DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways Nucleic Acids Research. ,vol. 37, ,(2009) , 10.1093/NAR/GKN991
Michael J Smanski, Swapnil Bhatia, Dehua Zhao, YongJin Park, Lauren B A Woodruff, Georgia Giannoukos, Dawn Ciulla, Michele Busby, Johnathan Calderon, Robert Nicol, D Benjamin Gordon, Douglas Densmore, Christopher A Voigt, Functional optimization of gene clusters by combinatorial design and assembly Nature Biotechnology. ,vol. 32, pp. 1241- 1249 ,(2014) , 10.1038/NBT.3063
Vivek K Mutalik, Joao C Guimaraes, Guillaume Cambray, Quynh-Anh Mai, Marc Juul Christoffersen, Lance Martin, Ayumi Yu, Colin Lam, Cesar Rodriguez, Gaymon Bennett, Jay D Keasling, Drew Endy, Adam P Arkin, Quantitative estimation of activity and quality for collections of functional genetic elements Nature Methods. ,vol. 10, pp. 347- 353 ,(2013) , 10.1038/NMETH.2403
Daniel G Gibson, Lei Young, Ray-Yuan Chuang, J Craig Venter, Clyde A Hutchison, Hamilton O Smith, Enzymatic assembly of DNA molecules up to several hundred kilobases Nature Methods. ,vol. 6, pp. 343- 345 ,(2009) , 10.1038/NMETH.1318
Ray Dixon, Daniel Kahn, Genetic regulation of biological nitrogen fixation Nature Reviews Microbiology. ,vol. 2, pp. 621- 631 ,(2004) , 10.1038/NRMICRO954
D. G. Gibson, J. I. Glass, C. Lartigue, V. N. Noskov, R.-Y. Chuang, M. A. Algire, G. A. Benders, M. G. Montague, L. Ma, M. M. Moodie, C. Merryman, S. Vashee, R. Krishnakumar, N. Assad-Garcia, C. Andrews-Pfannkoch, E. A. Denisova, L. Young, Z.-Q. Qi, T. H. Segall-Shapiro, C. H. Calvey, P. P. Parmar, C. A. Hutchison, H. O. Smith, J. C. Venter, Creation of a Bacterial Cell Controlled by a Chemically Synthesized Genome Science. ,vol. 329, pp. 52- 56 ,(2010) , 10.1126/SCIENCE.1190719
L. Thim, M. T. Hansen, K. Norris, I. Hoegh, E. Boel, J. Forstrom, G. Ammerer, N. P. Fiil, Secretion and processing of insulin precursors in yeast Proceedings of the National Academy of Sciences of the United States of America. ,vol. 83, pp. 6766- 6770 ,(1986) , 10.1073/PNAS.83.18.6766