Predicting the fate of eDNA in the environment and implications for studying biodiversity

作者: Jori B. Harrison , Jennifer M. Sunday , Sean M. Rogers

DOI: 10.1098/RSPB.2019.1409

关键词:

摘要: Environmental DNA (eDNA) applications are transforming the standard of characterizing aquatic biodiversity via presence, location and abundance collected from environmental samples. As eDNA studies use fragments as a proxy for presence organisms, ecological properties complex dynamic environments which is sampled need to be considered accurate biological interpretation. In this review, we discuss role that differing play on major processes undergoes between organism collection, including shedding, decay transport. We focus mechanistic understanding these highlight how transport models being developed towards more robust predictions fate eDNA. conclude with five recommendations researchers practitioners, advance current best practices, well support future model spatio-temporal persistence.

参考文章(111)
Stephen F. Jane, Taylor M. Wilcox, Kevin S. McKelvey, Michael K. Young, Michael K. Schwartz, Winsor H. Lowe, Benjamin H. Letcher, Andrew R. Whiteley, Distance, flow and PCR inhibition: eDNA dynamics in two headwater streams Molecular Ecology Resources. ,vol. 15, pp. 216- 227 ,(2015) , 10.1111/1755-0998.12285
Reza Alaeddini, Simon J. Walsh, Ali Abbas, Forensic implications of genetic analyses from degraded DNA—A review Forensic Science International-genetics. ,vol. 4, pp. 148- 157 ,(2010) , 10.1016/J.FSIGEN.2009.09.007
Gentile Francesco Ficetola, Claude Miaud, François Pompanon, Pierre Taberlet, Species detection using environmental DNA from water samples. Biology Letters. ,vol. 4, pp. 423- 425 ,(2008) , 10.1098/RSBL.2008.0118
Tomas Lindahl, Instability and decay of the primary structure of DNA Nature. ,vol. 362, pp. 709- 715 ,(1993) , 10.1038/362709A0
David R. Foran, Relative Degradation of Nuclear and Mitochondrial DNA: An Experimental Approach* Journal of Forensic Sciences. ,vol. 51, pp. 766- 770 ,(2006) , 10.1111/J.1556-4029.2006.00176.X
Eske Willerslev, Anders J Hansen, Jonas Binladen, Tina B Brand, M Thomas P Gilbert, Beth Shapiro, Michael Bunce, Carsten Wiuf, David A Gilichinsky, Alan Cooper, Diverse Plant and Animal Genetic Records from Holocene and Pleistocene Sediments Science. ,vol. 300, pp. 791- 795 ,(2003) , 10.1126/SCIENCE.1084114
A. W. Briggs, U. Stenzel, P. L. F. Johnson, R. E. Green, J. Kelso, K. Prufer, M. Meyer, J. Krause, M. T. Ronan, M. Lachmann, S. Paabo, Patterns of damage in genomic DNA sequences from a Neandertal Proceedings of the National Academy of Sciences of the United States of America. ,vol. 104, pp. 14616- 14621 ,(2007) , 10.1073/PNAS.0704665104
J. M. Williams, C. A. Duckworth, M. D. Burkitt, A. J. M. Watson, B. J. Campbell, D. M. Pritchard, Epithelial cell shedding and barrier function: a matter of life and death at the small intestinal villus tip. Veterinary Pathology. ,vol. 52, pp. 445- 455 ,(2015) , 10.1177/0300985814559404
J. R. Webster, E. F. Benfield, S. W. Golladay, B. H. Hill, L. E. Hornick, R. F. Kazmierczak, W. B. Perry, Experimental studies of physical factors affecting seston transport in streams1 Limnology and Oceanography. ,vol. 32, pp. 848- 863 ,(1987) , 10.4319/LO.1987.32.4.0848