Cross-species transmission of the newly identified coronavirus 2019-nCoV.
作者： Wei Ji , Wei Wang , Xiaofang Zhao , Junjie Zai , Xingguang Li
DOI: 10.1002/JMV.25682
关键词:
摘要: The current outbreak of viral pneumonia in the city Wuhan, China, was caused by a novel coronavirus designated 2019-nCoV World Health Organization, as determined sequencing RNA genome. Many initial patients were exposed to wildlife animals at Huanan seafood wholesale market, where poultry, snake, bats, and other farm also sold. To investigate possible virus reservoir, we have carried out comprehensive sequence analysis comparison conjunction with relative synonymous codon usage (RSCU) bias among different animal species based on sequence. Results obtained from our analyses suggest that may appear be recombinant between bat an origin-unknown coronavirus. recombination occurred within spike glycoprotein, which recognizes cell surface receptor. Additionally, findings has most similar genetic information coronovirus snake. Taken together, results homologous occur contribute cross-species transmission.
sci-hub.se 参考文章(22)
T A Hall, BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT Nucleic Acids Symposium Series. ,vol. 41, pp. 95- 98 ,(1999) , 10.14601/PHYTOPATHOL_MEDITERR-14998U1.29
F Clavel, M D Hoggan, R L Willey, K Strebel, M A Martin, R Repaske, Genetic recombination of human immunodeficiency virus. Journal of Virology. ,vol. 63, pp. 1455- 1459 ,(1989) , 10.1128/JVI.63.3.1455-1459.1989
Paul K. S. Chan, Outbreak of Avian Influenza A(H5N1) Virus Infection in Hong Kong in 1997 Clinical Infectious Diseases. ,vol. 34, ,(2002) , 10.1086/338820
W. Guo, Y. Cheng, X. Deng, Regeneration and molecular characterization of intergeneric somatic hybrids between Citrus reticulata and Poncirus trifoliata Plant Cell Reports. ,vol. 20, pp. 829- 834 ,(2002) , 10.1007/S00299-001-0399-7
Richard D. Smith, Responding to global infectious disease outbreaks: lessons from SARS on the role of risk perception, communication and management. Social Science & Medicine. ,vol. 63, pp. 3113- 3123 ,(2006) , 10.1016/J.SOCSCIMED.2006.08.004
Frank Wright, The 'effective number of codons' used in a gene. Gene. ,vol. 87, pp. 23- 29 ,(1990) , 10.1016/0378-1119(90)90491-9
Wei Ji, Dan-Dan Niu, Hong-Li Si, Nai-Zheng Ding, Cheng-Qiang He, Vaccination influences the evolution of classical swine fever virus Infection, Genetics and Evolution. ,vol. 25, pp. 69- 77 ,(2014) , 10.1016/J.MEEGID.2014.04.008
Iris Bahir, Menachem Fromer, Yosef Prat, Michal Linial, Viral adaptation to host: a proteome-based analysis of codon usage and amino acid preferences. Molecular Systems Biology. ,vol. 5, pp. 311- 311 ,(2009) , 10.1038/MSB.2009.71
Rodney Colina, Didier Casane, Silvia Vasquez, Laura García-Aguirre, Ausberto Chunga, Héctor Romero, Baldip Khan, Juan Cristina, Evidence of intratypic recombination in natural populations of hepatitis C virus Journal of General Virology. ,vol. 85, pp. 31- 37 ,(2004) , 10.1099/VIR.0.19472-0
Paul L. Bollyky, Andrew Rambaut, Paul H. Harvey, Edward C. Holmes, Recombination between sequences of hepatitis B virus from different genotypes Journal of Molecular Evolution. ,vol. 42, pp. 97- 102 ,(1996) , 10.1007/BF02198834