From the Wet Lab to the Web Lab: A Paradigm Shift in Brain Imaging Research.

作者: Anisha Keshavan , Jean-Baptiste Poline

DOI: 10.3389/FNINF.2019.00003

关键词:

摘要: Web technology has transformed our lives, and led to a paradigm shift in the computational sciences. As neuroimaging informatics research community amasses large datasets answer complex neuroscience questions, we find that web is best medium facilitate novel insights by way of improved collaboration communication. Here, review landscape technologies used research, discuss future applications, areas for improvement, limitations using research. Fully incorporating lifecycle requires not only technical skill, but widespread culture change; from small, focused "wet lab" multidisciplinary largely collaborative "web lab".

参考文章(80)
Lei Wang, Kathryn I. Alpert, Vince D. Calhoun, Derin J. Cobia, David B. Keator, Margaret D. King, Alexandr Kogan, Drew Landis, Marcelo Tallis, Matthew D. Turner, Steven G. Potkin, Jessica A. Turner, Jose Luis Ambite, SchizConnect: Mediating neuroimaging databases on schizophrenia and related disorders for large-scale integration. NeuroImage. ,vol. 124, pp. 1155- 1167 ,(2016) , 10.1016/J.NEUROIMAGE.2015.06.065
Isabelle Cook, Sam Grange, Adam Eyre-Walker, Research groups: How big should they be? PeerJ. ,vol. 3, ,(2015) , 10.7717/PEERJ.989
John Darrell Van Horn, Arthur W. Toga, Is it time to re-prioritize neuroimaging databases and digital repositories? NeuroImage. ,vol. 47, pp. 1720- 1734 ,(2009) , 10.1016/J.NEUROIMAGE.2009.03.086
Samir Das, Alex P. Zijdenbos, Jonathan Harlap, Dario Vins, Alan C. Evans, LORIS: a web-based data management system for multi-center studies. Frontiers in Neuroinformatics. ,vol. 5, pp. 37- 37 ,(2012) , 10.3389/FNINF.2011.00037
Judy Illes, Mary Anne Moser, Jennifer B. McCormick, Eric Racine, Sandra Blakeslee, Arthur Caplan, Erika Check Hayden, Jay Ingram, Tiffany Lohwater, Peter McKnight, Christie Nicholson, Anthony Phillips, Kevin D. Sauvé, Elaine Snell, Samuel Weiss, Neurotalk: improving the communication of neuroscience research Nature Reviews Neuroscience. ,vol. 11, pp. 61- 69 ,(2010) , 10.1038/NRN2773
Holly M. Bik, Miriam C. Goldstein, An Introduction to Social Media for Scientists PLoS Biology. ,vol. 11, pp. e1001535- ,(2013) , 10.1371/JOURNAL.PBIO.1001535
Tarek Sherif, Nicolas Kassis, Marc-Étienne Rousseau, Reza Adalat, Alan C. Evans, BrainBrowser: distributed, web-based neurological data visualization. Frontiers in Neuroinformatics. ,vol. 8, pp. 89- 89 ,(2015) , 10.3389/FNINF.2014.00089
Anthony M. Castronova, Jonathan L. Goodall, Mostafa M. Elag, Models as web services using the Open Geospatial Consortium (OGC) Web Processing Service (WPS) standard Environmental Modelling and Software. ,vol. 41, pp. 72- 83 ,(2013) , 10.1016/J.ENVSOFT.2012.11.010
Stephen M Smith, Mark Jenkinson, Mark W Woolrich, Christian F Beckmann, Timothy EJ Behrens, Heidi Johansen-Berg, Peter R Bannister, Marilena De Luca, Ivana Drobnjak, David E Flitney, Rami K Niazy, James Saunders, John Vickers, Yongyue Zhang, Nicola De Stefano, J Michael Brady, Paul M Matthews, None, Advances in functional and structural MR image analysis and implementation as FSL NeuroImage. ,vol. 23, pp. S208- S219 ,(2004) , 10.1016/J.NEUROIMAGE.2004.07.051
Guiomar Niso, Christine Rogers, Jeremy T. Moreau, Li-Yuan Chen, Cecile Madjar, Samir Das, Elizabeth Bock, François Tadel, Alan C. Evans, Pierre Jolicoeur, Sylvain Baillet, OMEGA: The Open MEG Archive NeuroImage. ,vol. 124, pp. 1182- 1187 ,(2016) , 10.1016/J.NEUROIMAGE.2015.04.028