Assessing the Stability of Alzheimer’s Amyloid Protofibrils Using Molecular Dynamics

作者: Justin A. Lemkul , David R. Bevan

DOI: 10.1021/JP9110794

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摘要: Amyloid fibrils represent a stable form of many misfolded proteins associated with numerous diseases. Among these are Parkinson’s disease (α-synuclein), Type II diabetes (islet amyloid polypeptide), and Alzheimer’s (amyloid β-peptide, Aβ). The appearance Aβ in neural tissue is hallmark disease, studies have been conducted to determine analyze the structure protein aggregates. principal toxic species believed be soluble, oligomeric aggregates Aβ, but found that insoluble fibrillated peptide also contributes neurotoxicity. Thus, design therapeutic agents combat progression it worthwhile understand thermodynamics destabilizing features contribute their stability. In this work, we present systematic study several factors influence stability Aβ42 following silico mutatio...

参考文章(52)
Kenjiro Ono, Kazuhiro Hasegawa, Yuji Yoshiike, Akihiko Takashima, Masahito Yamada, Hironobu Naiki, Nordihydroguaiaretic acid potently breaks down pre‐formed Alzheimer's β‐amyloid fibrils in vitro Journal of Neurochemistry. ,vol. 81, pp. 434- 440 ,(2002) , 10.1046/J.1471-4159.2002.00904.X
H. J. C. Berendsen, J. P. M. Postma, W. F. van Gunsteren, J. Hermans, Interaction Models for Water in Relation to Protein Hydration The Jerusalem Symposia on Quantum Chemistry and Biochemistry. pp. 331- 342 ,(1981) , 10.1007/978-94-015-7658-1_21
Pontus Wasling, Jonny Daborg, Ilse Riebe, My Andersson, Erik Portelius, Kaj Blennow, Eric Hanse, Henrik Zetterberg, Synaptic retrogenesis and amyloid-beta in Alzheimer's disease. Journal of Alzheimer's Disease. ,vol. 16, pp. 1- 14 ,(2009) , 10.3233/JAD-2009-0918
Berk Hess, Carsten Kutzner, David van der Spoel, Erik Lindahl, GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation Journal of Chemical Theory and Computation. ,vol. 4, pp. 435- 447 ,(2008) , 10.1021/CT700301Q
Robert Tycko, Insights into the Amyloid Folding Problem from Solid-State NMR Biochemistry. ,vol. 42, pp. 3151- 3159 ,(2003) , 10.1021/BI027378P
Shuichi Nosé, M.L. Klein, Constant pressure molecular dynamics for molecular systems Molecular Physics. ,vol. 50, pp. 1055- 1076 ,(1983) , 10.1080/00268978300102851
Christian Haass, Dennis J. Selkoe, Soluble protein oligomers in neurodegeneration: lessons from the Alzheimer's amyloid β-peptide Nature Reviews Molecular Cell Biology. ,vol. 8, pp. 101- 112 ,(2007) , 10.1038/NRM2101
Yifat Miller, Buyong Ma, Ruth Nussinov, Polymorphism of Alzheimer's Aβ17-42 (p3) Oligomers: The Importance of the Turn Location and Its Conformation Biophysical Journal. ,vol. 97, pp. 1168- 1177 ,(2009) , 10.1016/J.BPJ.2009.05.042
Jie Zheng, Hyunbum Jang, Buyong Ma, Chung-Jun Tsai, Ruth Nussinov, Modeling the Alzheimer Aβ17-42 Fibril Architecture: Tight Intermolecular Sheet-Sheet Association and Intramolecular Hydrated Cavities Biophysical Journal. ,vol. 93, pp. 3046- 3057 ,(2007) , 10.1529/BIOPHYSJ.107.110700