Structural principles of leucine‐rich repeat (LRR) proteins

作者: Purevjav Enkhbayar , Masakatsu Kamiya , Mitsuru Osaki , Takeshi Matsumoto , Norio Matsushima

DOI: 10.1002/PROT.10605

关键词:

摘要: LRR-containing proteins are present in over 2000 from viruses to eukaryotes. Most LRRs 20-30 amino acids long, and the repeat number ranges 2 42. The known structures of 14 LRR proteins, each containing 4-17 repeats, have revealed that domains fold into a horseshoe (or arc) shape with parallel beta-sheet on concave face various secondary structures, including alpha-helix, 3(10)-helix, pII helix convex face. We developed simple methods charactere quantitatively arc then applied them all proteins. A quantity 2Rsin(phi/2), which R phi radii rotation angle about central axis per repeating unit, respectively, is highly conserved regardless large variety radius arc. beta-alpha structural units smaller than those beta-3(10) or beta-pII units. forms surface analogous part Mobius strip.

参考文章(39)
Xiaolin L. He, J.Fernando Bazan, Gerry McDermott, Jong Bae Park, Kevin Wang, Marc Tessier-Lavigne, Zhigang He, K.Christopher Garcia, Structure of the Nogo receptor ectodomain: a recognition module implicated in myelin inhibition. Neuron. ,vol. 38, pp. 177- 185 ,(2003) , 10.1016/S0896-6273(03)00232-0
Brenda A. Schulman, Andrea C. Carrano, Philip D. Jeffrey, Zachary Bowen, Elspeth R. E. Kinnucan, Michael S. Finnin, Stephen J. Elledge, J. Wade Harper, Michele Pagano, Nikola P. Pavletich, Insights into SCF ubiquitin ligases from the structure of the Skp1–Skp2 complex Nature. ,vol. 408, pp. 381- 386 ,(2000) , 10.1038/35042620
Gregory P. Mullen, Stephen M. King, Hongwei Wu, Mark W. Maciejewski, Assen Marintchev, Sharon E. Benashski, Solution structure of a dynein motor domain associated light chain. Nature Structural & Molecular Biology. ,vol. 7, pp. 575- 579 ,(2000) , 10.1038/76804
Stephen R. Price, Philip R. Evans, Kiyoshi Nagai, Crystal structure of the spliceosomal U2B″–U2A′ protein complex bound to a fragment of U2 small nuclear RNA Nature. ,vol. 394, pp. 645- 650 ,(1998) , 10.1038/29234
Roman C. Hillig, Louis Renault, Ingrid R. Vetter, Theodore Drell, Alfred Wittinghofer, Jörg Becker, The Crystal Structure of rna1p: A New Fold for a GTPase-Activating Protein Molecular Cell. ,vol. 3, pp. 781- 791 ,(1999) , 10.1016/S1097-2765(01)80010-1
I. Lasters, S. J. Wodak, P. Alard, E. van Cutsem, Structural principles of parallel beta-barrels in proteins. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 85, pp. 3338- 3342 ,(1988) , 10.1073/PNAS.85.10.3338
Andrey V Kajava, Gilbert Vassart, Shoshana J Wodak, Modeling of the three-dimensional structure of proteins with the typical leucine-rich repeats Structure. ,vol. 3, pp. 867- 877 ,(1995) , 10.1016/S0969-2126(01)00222-2
Erika Liker, Elena Fernandez, Elisa Izaurralde, Elena Conti, The structure of the mRNA export factor TAP reveals a cis arrangement of a non-canonical RNP domain and an LRR domain. The EMBO Journal. ,vol. 19, pp. 5587- 5598 ,(2000) , 10.1093/EMBOJ/19.21.5587