Comparison of point-of-care-compatible lysis methods for bacteria and viruses.

作者: Erin K. Heiniger , Joshua R. Buser , Lillian Mireles , Xiaohong Zhang , Paula D. Ladd

DOI: 10.1016/J.MIMET.2016.07.007

关键词:

摘要: Nucleic acid sample preparation has been an especially challenging barrier to point-of-care nucleic amplification tests in low-resource settings. Here we provide a head-to-head comparison of methods for lysis of, and release from, several pathogenic bacteria viruses-methods that are adaptable usage Digestion with achromopeptidase, mixture proteases peptidoglycan-specific hydrolases, followed by thermal deactivation boiling water bath, effectively released amplifiable from Staphylococcus aureus, Bordetella pertussis, respiratory syncytial virus, influenza virus. Achromopeptidase was functional after dehydration reconstitution, even eleven months dry storage without refrigeration. Mechanical proved be effective against hard-to-lyse Mycobacterium species, miniature bead-mill, the AudioLyse, is shown capable releasing DNA RNA this species. We conclude point-of-care-compatible need not introduce inhibitors, can amplification-ready lysates wide range bacterial viral pathogens.

参考文章(49)
Kathleen M. Tatti, Maria Lucia Tondella, Utilization of Multiple Real-Time PCR Assays for the Diagnosis of Bordetella spp. in Clinical Specimens Methods of Molecular Biology. ,vol. 943, pp. 135- 147 ,(2013) , 10.1007/978-1-60327-353-4_9
Lian-Yong Gao, Joanna Manoranjan, Laboratory Maintenance of Mycobacterium marinum Current protocols in microbiology. ,(2005) , 10.1002/9780471729259.MC10B01S00
Christine L. Cosma, Laura E. Swaim, Hannah Volkman, Lalita Ramakrishnan, J. Muse Davis, Zebrafish and frog models of Mycobacterium marinum infection. Current protocols in microbiology. ,vol. 3, ,(2006) , 10.1002/0471729256.MC10B02S3
David Mabey, Rosanna W. Peeling, Andrew Ustianowski, Mark D. Perkins, Diagnostics for the developing world. Nature Reviews Microbiology. ,vol. 2, pp. 231- 240 ,(2004) , 10.1038/NRMICRO841
Bhushan J. Toley, Isabela Covelli, Yevgeniy Belousov, Sujatha Ramachandran, Enos Kline, Noah Scarr, Nic Vermeulen, Walt Mahoney, Barry R. Lutz, Paul Yager, Isothermal strand displacement amplification (iSDA): a rapid and sensitive method of nucleic acid amplification for point-of-care diagnosis The Analyst. ,vol. 140, pp. 7540- 7549 ,(2015) , 10.1039/C5AN01632K
S. A. Byrnes, J. D. Bishop, L. Lafleur, J. R. Buser, B. Lutz, P. Yager, One-step purification and concentration of DNA in porous membranes for point-of-care applications Lab on a Chip. ,vol. 15, pp. 2647- 2659 ,(2015) , 10.1039/C5LC00317B
J. R. Buser, S. Diesburg, J. Singleton, D. Guelig, J. D. Bishop, C. Zentner, R. Burton, P. LaBarre, P. Yager, B. H. Weigl, Precision chemical heating for diagnostic devices Lab on a Chip. ,vol. 15, pp. 4423- 4432 ,(2015) , 10.1039/C5LC01053E
Robin R. Hulbert, Peggy A. Cotter, Laboratory Maintenance of Bordetella pertussis. Current protocols in microbiology. ,vol. 15, ,(2009) , 10.1002/9780471729259.MC04B01S15
J. R. Buser, A. Wollen, E. K. Heiniger, S. A. Byrnes, P. C. Kauffman, P. D. Ladd, P. Yager, Electromechanical cell lysis using a portable audio device: enabling challenging sample preparation at the point-of-care. Lab on a Chip. ,vol. 15, pp. 1994- 1997 ,(2015) , 10.1039/C5LC00080G