Genome-wide characterization of coding and non-coding RNAs in the ovary of honeybee workers and queens

作者: Xiao Chen , Wei Shi

DOI: 10.1007/S13592-020-00760-7

关键词:

摘要: Adult honeybee queens and workers drastically differ in ovary state size. However, this reproductive bias is only partially understood from the view of a single RNA type. In study, we predicted 10,271 mRNAs, 7235 lncRNAs, 11,794 circRNAs, 164 miRNAs through bioinformatics. Combining sequencing data virgin queens, 4385 2390 5602 75 were differentially expressed compared with virgins. Compared egg-laying 6536 3130 5751 81 workers. Further, functional annotation revealed that neural regulation was closely related to state. Moreover, potential interactions among miRNAs, mRNAs vitellogenin, ecdysone-induced protein 74, ame_circ_0001176, ame_circ_0001243 might play critical roles competing endogenous network. These findings suggest integrative networks have effects ovarian phenotype differences honeybees.

参考文章(48)
Mark L. Winston, The Biology of the Honey Bee ,(1987)
Zhaojian Gong, Qian Yang, Zhaoyang Zeng, Wenling Zhang, Xiayu Li, Xuyu Zu, Hao Deng, Pan Chen, Qianjin Liao, Bo Xiang, Ming Zhou, Xiaoling Li, Yong Li, Wei Xiong, Guiyuan Li, An integrative transcriptomic analysis reveals p53 regulated miRNA, mRNA, and lncRNA networks in nasopharyngeal carcinoma Tumor Biology. ,vol. 37, pp. 3683- 3695 ,(2016) , 10.1007/S13277-015-4156-X
Doori Park, Je Won Jung, Beom-Soon Choi, Murukarthick Jayakodi, Jeongsoo Lee, Jongsung Lim, Yeisoo Yu, Yong-Soo Choi, Myeong-Lyeol Lee, Yoonseong Park, Ik-Young Choi, Tae-Jin Yang, Owain R Edwards, Gyoungju Nah, Hyung Wook Kwon, Uncovering the novel characteristics of Asian honey bee, Apis cerana, by whole genome sequencing BMC Genomics. ,vol. 16, pp. 1- 16 ,(2015) , 10.1186/1471-2164-16-1
Renhua Song, Qian Liu, Tao Liu, Jinyan Li, Connecting rules from paired miRNA and mRNA expression data sets of HCV patients to detect both inverse and positive regulatory relationships asia-pacific bioinformatics conference. ,vol. 16, pp. 1- 14 ,(2015) , 10.1186/1471-2164-16-S2-S11
Vipul C. Chitalia, Rebecca L. Foy, Markus M. Bachschmid, Liling Zeng, Maria V. Panchenko, Mina I. Zhou, Ajit Bharti, David C. Seldin, Stewart H. Lecker, Isabel Dominguez, Herbert T. Cohen, Jade-1 inhibits Wnt signalling by ubiquitylating beta-catenin and mediates Wnt pathway inhibition by pVHL. Nature Cell Biology. ,vol. 10, pp. 1208- 1216 ,(2008) , 10.1038/NCB1781
Shelley E.R. Hoover, Christopher I. Keeling, Mark L. Winston, Keith N. Slessor, The effect of queen pheromones on worker honey bee ovary development. Naturwissenschaften. ,vol. 90, pp. 477- 480 ,(2003) , 10.1007/S00114-003-0462-Z
Xiangqian Guo, Songkun Su, Geir Skogerboe, Shuanjin Dai, Wenfeng Li, Zhiguo Li, Fang Liu, Ruifeng Ni, Yu Guo, Shenglu Chen, Shaowu Zhang, Runsheng Chen, Recipe for a busy bee: microRNAs in Honey Bee caste determination. PLOS ONE. ,vol. 8, ,(2013) , 10.1371/JOURNAL.PONE.0081661
Evan R Barry, Fernando D Camargo, The Hippo superhighway: signaling crossroads converging on the Hippo/Yap pathway in stem cells and development. Current Opinion in Cell Biology. ,vol. 25, pp. 247- 253 ,(2013) , 10.1016/J.CEB.2012.12.006
Rituparno Sen, Suman Ghosal, Shaoli Das, Subrata Balti, Jayprokas Chakrabarti, Competing Endogenous RNA: The Key to Posttranscriptional Regulation The Scientific World Journal. ,vol. 2014, pp. 896206- 896206 ,(2014) , 10.1155/2014/896206