Weighted Protein Interaction Network Analysis of Frontotemporal Dementia

作者: Raffaele Ferrari , Ruth C Lovering , John Hardy , Patrick A Lewis , Claudia Manzoni

DOI: 10.1021/ACS.JPROTEOME.6B00934

关键词:

摘要: The genetic analysis of complex disorders has undoubtedly led to the identification a wealth associations between genes and specific traits. However, moving from genetics biochemistry one gene at time has, date, rather proved inefficient under-powered comprehensively explain molecular basis phenotypes. Here we present novel approach, weighted protein–protein interaction network (W-PPI-NA), highlight key functional players within relevant biological processes associated with given trait. This is exemplified in current study by applying W-PPI-NA frontotemporal dementia (FTD): We first built state art FTD protein (FTD-PN) then analyzed both its topological features. FTD-PN resulted sum individual interactomes around FTD-spectrum genes, leading total 4198 nodes. Twenty nine nodes, called inter-interactome hubs (IIHs), represented those interactors able bridge over 60% in...

参考文章(78)
Neelroop N. Parikshak, Michael J. Gandal, Daniel H. Geschwind, Systems biology and gene networks in neurodevelopmental and neurodegenerative disorders Nature Reviews Genetics. ,vol. 16, pp. 441- 458 ,(2015) , 10.1038/NRG3934
José M Frade, María C Ovejero-Benito, None, Neuronal cell cycle: the neuron itself and its circumstances Cell Cycle. ,vol. 14, pp. 712- 720 ,(2015) , 10.1080/15384101.2015.1004937
Marialaura Amadio, Alessia Pascale, Jun Wang, Lap Ho, Alessandro Quattrone, Sam Gandy, Vahram Haroutunian, Marco Racchi, Giulio Maria Pasinetti, nELAV Proteins Alteration in Alzheimer's Disease Brain: A Novel Putative Target for Amyloid-β Reverberating on AβPP Processing Journal of Alzheimer's Disease. ,vol. 16, pp. 409- 419 ,(2009) , 10.3233/JAD-2009-0967
Patricia Natalia Silva, Tatiane Katsue Furuya, Ianna Lacerda Braga, Lucas Trevizani Rasmussen, Roger Willian Labio, Paulo Henrique Bertolucci, Elizabeth Suchi Chen, Gustavo Turecki, Naguib Mechawar, Spencer Luiz Payão, Jonathan Mill, Marília Cardoso Smith, Analysis of HSPA8 and HSPA9 mRNA expression and promoter methylation in the brain and blood of Alzheimer's disease patients. Journal of Alzheimer's Disease. ,vol. 38, pp. 165- 170 ,(2013) , 10.3233/JAD-130428
Yu-Long Lan, Jie Zhao, Shao Li, Update on the neuroprotective effect of estrogen receptor alpha against Alzheimer's disease. Journal of Alzheimer's Disease. ,vol. 43, pp. 1137- 1148 ,(2014) , 10.3233/JAD-141875
Raffaele Ferrari, Avinash Thumma, Parastoo Momeni, None, Molecular Genetics of Frontotemporal Dementia eLS. ,(2013) , 10.1002/9780470015902.A0024457
Sandra Orchard, Molecular interaction databases. Proteomics. ,vol. 12, pp. 1656- 1662 ,(2012) , 10.1002/PMIC.201100484
Peter Langfelder, Steve Horvath, WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics. ,vol. 9, pp. 559- 559 ,(2008) , 10.1186/1471-2105-9-559
Yuetiva Deming, Carlos Cruchaga, None, TMEM106B: a strong FTLD disease modifier Acta Neuropathologica. ,vol. 127, pp. 419- 422 ,(2014) , 10.1007/S00401-014-1249-3