Reference gene validation for quantification of gene expression during ovarian development of turbot (Scophthalmus maximus).

作者: Yunhong Gao , Yuntao Gao , Bin Huang , Zhen Meng , Yudong Jia

DOI: 10.1038/S41598-020-57633-3

关键词:

摘要: Quantitative real-time reverse transcription-polymerase chain reaction (qRT-PCR) is a powerful and sensitive method used in gene expression analysis. Suitable reference genes, which are stable under all experimental circumstances tissues significantly improve the accuracy of qRT-PCR data. In this study, stability six namely, 18S ribosomal RNA (18s), beta-actin (actb), elongation factor 1-alpha (ef1α), glyceraldehyde-3-phosphate-dehydrogenase (gapdh), cathepsin D (ctsd), beta-2-microglobulin (b2m) were evaluated as potential references for The genes examined hypothalamus-pituitary-ovary-liver (HPOL) axis throughout turbot ovarian development via using geNorm, NormFinder BestKeeper algorithms. Results showed that most ef1α, actb, ctsd hypothalamus, pituitary, ovary liver, respectively. best-suited combinations normalization 18s, hypothalamus; ctsd, 18s pituitary; ovary; gapdh liver. Moreover, profile estrogen receptor α (erα) manifested no significant difference to aforementioned during development. However, single or pair suitable an internal control account amplification differences among four summary, these results provide basic data optimal selection obtain highly accurate HPOL axis-related analysis

参考文章(37)
Yudong Jia, Zhen Meng, Xinfu Liu, Jilin Lei, Biochemical composition and quality of turbot (Scophthalmus maximus) eggs throughout the reproductive season. Fish Physiology and Biochemistry. ,vol. 40, pp. 1093- 1104 ,(2014) , 10.1007/S10695-014-9908-9
Jo Vandesompele, Katleen De Preter, Filip Pattyn, Bruce Poppe, Nadine Van Roy, Anne De Paepe, Frank Speleman, Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes Genome Biology. ,vol. 3, pp. 1- 12 ,(2002) , 10.1186/GB-2002-3-7-RESEARCH0034
Sophie Dhorne-Pollet, Aurore Thélie, Nicolas Pollet, Validation of novel reference genes for RT-qPCR studies of gene expression in Xenopus tropicalis during embryonic and post-embryonic development. Developmental Dynamics. ,vol. 242, pp. 709- 717 ,(2013) , 10.1002/DVDY.23972
Andreas Schroeder, Odilo Mueller, Susanne Stocker, Ruediger Salowsky, Michael Leiber, Marcus Gassmann, Samar Lightfoot, Wolfram Menzel, Martin Granzow, Thomas Ragg, The RIN: an RNA integrity number for assigning integrity values to RNA measurements BMC Molecular Biology. ,vol. 7, pp. 3- 3 ,(2006) , 10.1186/1471-2199-7-3
Y. D. Jia, H. X. Niu, Z. Meng, X. F. Liu, J. L. Lei, Biochemical composition of the ovarian fluid and its effects on the fertilization capacity of turbot Scophthalmus maximus during the spawning season Journal of Fish Biology. ,vol. 86, pp. 1612- 1620 ,(2015) , 10.1111/JFB.12676
Chang Geng Yang, Xian Li Wang, Juan Tian, Wei Liu, Fan Wu, Ming Jiang, Hua Wen, Evaluation of reference genes for quantitative real-time RT-PCR analysis of gene expression in Nile tilapia (Oreochromis niloticus). Gene. ,vol. 527, pp. 183- 192 ,(2013) , 10.1016/J.GENE.2013.06.013