GOPET: a tool for automated predictions of Gene Ontology terms.

作者: Arunachalam Vinayagam , Coral del Val , Falk Schubert , Roland Eils , Karl-Heinz Glatting

DOI: 10.1186/1471-2105-7-161

关键词:

摘要: Background Vast progress in sequencing projects has called for annotation on a large scale. A Number of methods have been developed to address this challenging task. These methods, however, either apply specific subsets, or their predictions are not formalised, they do provide precise confidence values predictions.

参考文章(28)
Michael P. Cummings, PHYLIP (Phylogeny Inference Package) Dictionary of Bioinformatics and Computational Biology. ,(2004) , 10.1002/0471650129.DOB0534
Barbara Hammer, Kai Gersmann, A Note on the Universal Approximation Capability of Support Vector Machines Neural Processing Letters. ,vol. 17, pp. 43- 53 ,(2003) , 10.1023/A:1022936519097
Michael Ashburner, Catherine A Ball, Judith A Blake, H Butler, JM Cherry, J Corradi, K Dolinski, JT Eppig, MA Harris, DP Hill, S Lewis, B Marshall, C Mungall, L Reiser, S Rhee, JE Richardson, J Richter, Martin Ringwald, Gerald M Rubin, Gavin Sherlock, J Yoon, Creating the gene ontology resource: design and implementation. pp. 1425- ,(2001)
Thure Etzold, Anatoly Ulyanov, Patrick Argos, SRS: information retrieval system for molecular biology data banks. Methods in Enzymology. ,vol. 266, pp. 114- 128 ,(1996) , 10.1016/S0076-6879(96)66010-8
Coral del Val, Karl-Heinz Glatting, Sandor Suhai, cDNA2Genome: A tool for mapping and annotating cDNAs BMC Bioinformatics. ,vol. 4, pp. 39- 39 ,(2003) , 10.1186/1471-2105-4-39
P. Ernst, K.-H. Glatting, S. Suhai, A task framework for the web interface W2H. Bioinformatics. ,vol. 19, pp. 278- 282 ,(2003) , 10.1093/BIOINFORMATICS/19.2.278
Muriel Umbhauer, Alexandre Djiane, Céline Goisset, Alfredo Penzo‐Méndez, Jean‐François Riou, Jean‐Claude Boucaut, De‐Li Shi, The C-terminal cytoplasmic Lys-Thr-X-X-X-Trp motif in frizzled receptors mediates Wnt/β-catenin signalling The EMBO Journal. ,vol. 19, pp. 4944- 4954 ,(2000) , 10.1093/EMBOJ/19.18.4944
M. A. Andrade, N. P. Brown, C. Leroy, S. Hoersch, A. de Daruvar, C. Reich, A. Franchini, J. Tamames, A. Valencia, C. Ouzounis, C. Sander, Automated genome sequence analysis and annotation. Bioinformatics. ,vol. 15, pp. 391- 412 ,(1999) , 10.1093/BIOINFORMATICS/15.5.391
Robert J Tibshirani, Bradley Efron, An introduction to the bootstrap ,(1993)