Correlating microbial community profiles with geochemical data in highly stratified sediments from the Arctic Mid-Ocean Ridge.

作者: Steffen Leth Jorgensen , Bjarte Hannisdal , Anders Lanzén , Tamara Baumberger , Kristin Flesland

DOI: 10.1073/PNAS.1207574109

关键词:

摘要: Microbial communities and their associated metabolic activity in marine sediments have a profound impact on global biogeochemical cycles. Their composition structure are attributed to geochemical physical factors, but finding direct correlations has remained challenge. Here we show significant statistical relationship between variation prokaryotic community within deep-sea sediments. We obtained comprehensive data from two gravity cores near the hydrothermal vent field Loki’s Castle at Arctic Mid-Ocean Ridge, Norwegian-Greenland Sea. Geochemical properties rift valley exhibited strong centimeter-scale stratigraphic variability. populations were profiled by pyrosequencing 15 sediment horizons (59,364 16S rRNA gene tags), quantitatively assessed qPCR, phylogenetically analyzed. Although same taxa generally present all samples, relative abundances varied substantially among fluctuated Bacteria- Archaea-dominated communities. By independently summarizing covariance structures of abundance data, using principal components analysis, found correlation changes structure. Differences organic carbon mineralogy shaped microbial taxa. used build hypotheses about energy metabolisms, particularly Deep Sea Archaeal Group, specific Deltaproteobacteria, lineages potentially anaerobic Marine Group I Archaea. demonstrate that total can be directly correlated geochemistry these sediments, thus enhancing our understanding cycling ability predict metabolisms uncultured microbes

参考文章(84)
Bo Barker Jørgensen, Antje Boetius, Feast and famine — microbial life in the deep-sea bed Nature Reviews Microbiology. ,vol. 5, pp. 770- 781 ,(2007) , 10.1038/NRMICRO1745
Masahiro Yamamoto, Satoshi Nakagawa, Shigeru Shimamura, Ken Takai, Koki Horikoshi, Molecular characterization of inorganic sulfur-compound metabolism in the deep-sea epsilonproteobacterium Sulfurovum sp. NBC37-1. Environmental Microbiology. ,vol. 12, pp. 1144- 1153 ,(2010) , 10.1111/J.1462-2920.2010.02155.X
Michael Pester, Thomas Rattei, Stefan Flechl, Alexander Gröngröft, Andreas Richter, Jörg Overmann, Barbara Reinhold‐Hurek, Alexander Loy, Michael Wagner, amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions. Environmental Microbiology. ,vol. 14, pp. 525- 539 ,(2012) , 10.1111/J.1462-2920.2011.02666.X
Josep A Martín-Fernández, Carles Barceló-Vidal, Vera Pawlowsky-Glahn, Dealing with Zeros and Missing Values in Compositional Data Sets Using Nonparametric Imputation Mathematical Geosciences. ,vol. 35, pp. 253- 278 ,(2003) , 10.1023/A:1023866030544
Antje Boetius, Katrin Ravenschlag, Carsten J. Schubert, Dirk Rickert, Friedrich Widdel, Armin Gieseke, Rudolf Amann, Bo Barker Jørgensen, Ursula Witte, Olaf Pfannkuche, A marine microbial consortium apparently mediating anaerobic oxidation of methane Nature. ,vol. 407, pp. 623- 626 ,(2000) , 10.1038/35036572
Marc Strous, John A. Fuerst, Evelien H. M. Kramer, Susanne Logemann, Gerard Muyzer, Katinka T. van de Pas-Schoonen, Richard Webb, J. Gijs Kuenen, Mike S. M. Jetten, Missing lithotroph identified as new planctomycete Nature. ,vol. 400, pp. 446- 449 ,(1999) , 10.1038/22749
Alexander H. Treusch, Sven Leininger, Arnulf Kletzin, Stephan C. Schuster, Hans-Peter Klenk, Christa Schleper, Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environmental Microbiology. ,vol. 7, pp. 1985- 1995 ,(2005) , 10.1111/J.1462-2920.2005.00906.X
Gordon Webster, R. John Parkes, Barry A. Cragg, Carole J. Newberry, Andrew J. Weightman, John C. Fry, Prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin. FEMS Microbiology Ecology. ,vol. 58, pp. 65- 85 ,(2006) , 10.1111/J.1574-6941.2006.00147.X
Gordon Webster, Laura Yarram, Elke Freese, Jürgen Köster, Henrik Sass, R. John Parkes, Andrew J. Weightman, Distribution of candidate division JS1 and other Bacteria in tidal sediments of the German Wadden Sea using targeted 16S rRNA gene PCR-DGGE. FEMS Microbiology Ecology. ,vol. 62, pp. 78- 89 ,(2007) , 10.1111/J.1574-6941.2007.00372.X