Genome-wide analysis of heterosis-related genes in non-heading Chinese cabbage

作者: Hankuil Yi , Jeongyeo Lee , Hayong Song , Xiangshu Dong , Yoonkang Hur

DOI: 10.5010/JPB.2017.44.3.208

关键词:

摘要: Heterosis or hybrid vigor describes a phenomenon that superior phenotypes compared to the two parents are observed in heterozygous F1-hybrid plants. Identification and characterization of heterosis-related genes (HRGs) will facilitate breeding crops. To identify HRGs Brassica rapa, we analyzed transcriptome profiling using Br300K microarray non-heading Chinese cabbage at three developmental stages. A large number were differentially expressed F1 hybrids non-additive expression was prominent. Genes specifically for all stages Brassica-specific uncharacterized several defense-related genes. Expression photosynthesis- stress-related also hybrid-specific. Thirteen NBS-LRR class showed high specific Shulu: some them characterized as defense Arabidopsis, but most have not been. Further these species its application be helpful understanding role responses heterosis. In addition, results obtained this study valuable develop molecular markers heterosis disease resistance B. rapa.

参考文章(42)
Christopher Workman, Lars Jensen, Hanne Jarmer, Randy Berka, Laurent Gautier, Henrik Nielser, Hans-Henrik Saxild, Claus Nielsen, Søren Brunak, Steen Knudsen, A new non-linear normalization method for reducing variability in DNA microarray experiments Genome Biology. ,vol. 3, pp. 1- 16 ,(2002) , 10.1186/GB-2002-3-9-RESEARCH0048
Vivien Sarazin, Jérome Duclercq, Benjamin Mendou, Laurent Aubanelle, Veyres Nicolas, Mitsuko Aono, Serge Pilard, François Guerineau, Brigitte Sangwan-Norreel, Rajbir S. Sangwan, Arabidopsis BNT1, an atypical TIR-NBS-LRR gene, acting as a regulator of the hormonal response to stress. Plant Science. ,vol. 239, pp. 216- 229 ,(2015) , 10.1016/J.PLANTSCI.2015.07.017
Michael Groszmann, Rebeca Gonzalez-Bayon, Rebecca L. Lyons, Ian K. Greaves, Kemal Kazan, W. James Peacock, Elizabeth S. Dennis, Hormone-regulated defense and stress response networks contribute to heterosis in Arabidopsis F1 hybrids Proceedings of the National Academy of Sciences of the United States of America. ,vol. 112, ,(2015) , 10.1073/PNAS.1519926112
S. Athanasios Tsaftaris, Molecular aspects of heterosis in plants Physiologia Plantarum. ,vol. 94, pp. 362- 370 ,(1995) , 10.1111/J.1399-3054.1995.TB05324.X
Xiangshu Dong, Hui Feng, Ming Xu, Jeongyeo Lee, Yeon Ki Kim, Yong Pyo Lim, Zhongyun Piao, Young Doo Park, Hong Ma, Yoonkang Hur, Comprehensive Analysis of Genic Male Sterility-Related Genes in Brassica rapa Using a Newly Developed Br300K Oligomeric Chip PLoS ONE. ,vol. 8, pp. e72178- ,(2013) , 10.1371/JOURNAL.PONE.0072178
Ai Li, Meng-Die Fang, Wen-Qin Song, Cheng-Bin Chen, Li-Wang Qi, Chun-Guo Wang, Gene expression profiles of two intraspecific Larix lines and their reciprocal hybrids Molecular Biology Reports. ,vol. 39, pp. 3773- 3784 ,(2012) , 10.1007/S11033-011-1154-Y
Robert M Stupar, Jack M Gardiner, Aaron G Oldre, William J Haun, Vicki L Chandler, Nathan M Springer, Gene expression analyses in maize inbreds and hybrids with varying levels of heterosis BMC Plant Biology. ,vol. 8, pp. 33- 33 ,(2008) , 10.1186/1471-2229-8-33
Assaf Zemach, M. Yvonne Kim, Ping-Hung Hsieh, Devin Coleman-Derr, Leor Eshed-Williams, Ka Thao, Stacey L. Harmer, Daniel Zilberman, The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin Cell. ,vol. 153, pp. 193- 205 ,(2013) , 10.1016/J.CELL.2013.02.033
Frank Hochholdinger, Nadine Hoecker, Towards the molecular basis of heterosis. Trends in Plant Science. ,vol. 12, pp. 427- 432 ,(2007) , 10.1016/J.TPLANTS.2007.08.005
Zachary B. Lippman, Dani Zamir, Heterosis: revisiting the magic Trends in Genetics. ,vol. 23, pp. 60- 66 ,(2007) , 10.1016/J.TIG.2006.12.006