Similarity based SAR (SIBAR) as tool for early ADME profiling.

作者: Christian Klein , Dominik Kaiser , Stephan Kopp , Peter Chiba , Gerhard F Ecker

DOI: 10.1023/A:1023828527638

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摘要: Estimation of bioavailability and toxicity at the very beginning drug development process is one big challenges in discovery. Most processes involved ADME are driven by rather unspecific interactions between drugs biological macromolecules. Within past decade, transport pumps such as P-glycoprotein (Pgp) have gained increasing interest early profiling process. Due to high structural diversity ligands Pgp, traditional QSAR methods were only successful within analogous series compounds. We used an approach based on similarity calculations predict Pgp-inhibitory activity a propafenone analogues. This SIBAR selection highly diverse reference compound set calculation values these The (denoted descriptors) then for PLS analysis. Our results show, that 131 type compounds, models with good predictivity obtained both cross validation procedures 31-compound external test set. Thus, new descriptors might be versatile tool generation predictive models.

参考文章(25)
Katrin Palm, Patric Stenberg, Kristina Luthman, Per Artursson1, Polar Molecular Surface Properties Predict the Intestinal Absorption of Drugs in Humans Pharmaceutical Research. ,vol. 14, pp. 568- 571 ,(1997) , 10.1023/A:1012188625088
G. Ecker, M. Huber, D. Schmid, P. Chiba, The importance of a nitrogen atom in modulators of multidrug resistance. Molecular Pharmacology. ,vol. 56, pp. 791- 796 ,(1999)
Lowell H. Hall, Brian Mohney, Lemont B. Kier, The electrotopological state: structure information at the atomic level of molecular Journal of Chemical Information and Computer Sciences. ,vol. 31, pp. 76- 82 ,(1991) , 10.1021/CI00001A012
Gabriele Cruciani, Manuel Pastor, Wolfgang Guba, VolSurf: a new tool for the pharmacokinetic optimization of lead compounds. European Journal of Pharmaceutical Sciences. ,vol. 11, ,(2000) , 10.1016/S0928-0987(00)00162-7
Romualdo Benigni, Marina Cotta-Ramusino, Fabrizio Giorgi, Grazia Gallo, Molecular similarity matrices and quantitative structure-activity relationships: a case study with methodological implications. Journal of Medicinal Chemistry. ,vol. 38, pp. 629- 635 ,(1995) , 10.1021/JM00004A009
Anwar M. Ghuloum, Carleton R. Sage, Ajay N. Jain, Molecular hashkeys: a novel method for molecular characterization and its application for predicting important pharmaceutical properties of molecules. Journal of Medicinal Chemistry. ,vol. 42, pp. 1739- 1748 ,(1999) , 10.1021/JM980527A
Michael M. Gottesman, Tito Fojo, Susan E. Bates, Multidrug resistance in cancer: role of ATP–dependent transporters Nature Reviews Cancer. ,vol. 2, pp. 48- 58 ,(2002) , 10.1038/NRC706
Gerhard Ecker, Peter Chiba, Manuela Hitzler, Diethard Schmid, Klaus Visser, Hans Peter Cordes, Josef Csöllei, Joachim K. Seydel, Klaus-Jürgen Schaper, Structure−Activity Relationship Studies on Benzofuran Analogs of Propafenone-Type Modulators of Tumor Cell Multidrug Resistance Journal of Medicinal Chemistry. ,vol. 39, pp. 4767- 4774 ,(1996) , 10.1021/JM960384X
Andrew C. Good, Stephen J. Peterson, W. Graham Richards, QSAR's from similarity matrices. Technique validation and application in the comparison of different similarity evaluation methods. Journal of Medicinal Chemistry. ,vol. 36, pp. 2929- 2937 ,(1993) , 10.1021/JM00072A012
Jens Sadowski, Hugo Kubinyi, A Scoring Scheme for Discriminating between Drugs and Nondrugs Journal of Medicinal Chemistry. ,vol. 41, pp. 3325- 3329 ,(1998) , 10.1021/JM9706776