Computational Modeling of Microbial Communities

作者: Siu H. J. Chan , Margaret Simons , Costas D. Maranas

DOI: 10.1002/9783527696130.CH6

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参考文章(121)
Allan Konopka, What is microbial community ecology The ISME Journal. ,vol. 3, pp. 1223- 1230 ,(2009) , 10.1038/ISMEJ.2009.88
Filipe Branco dos Santos, Willem M de Vos, Bas Teusink, Towards metagenome-scale models for industrial applications--the case of Lactic Acid Bacteria. Current Opinion in Biotechnology. ,vol. 24, pp. 200- 206 ,(2013) , 10.1016/J.COPBIO.2012.11.003
Adil Mardinoglu, Saeed Shoaie, Mattias Bergentall, Pouyan Ghaffari, Cheng Zhang, Erik Larsson, Fredrik Bäckhed, Jens Nielsen, The gut microbiota modulates host amino acid and glutathione metabolism in mice Molecular Systems Biology. ,vol. 11, pp. 834- 834 ,(2015) , 10.15252/MSB.20156487
Michael S. Rappé, Stephen J. Giovannoni, The Uncultured Microbial Majority Annual Review of Microbiology. ,vol. 57, pp. 369- 394 ,(2003) , 10.1146/ANNUREV.MICRO.57.030502.090759
Anne-Soisig Steunou, Devaki Bhaya, Mary M. Bateson, Melanie C. Melendrez, David M. Ward, Eric Brecht, John W. Peters, Michael Kühl, Arthur R. Grossman, In situ analysis of nitrogen fixation and metabolic switching in unicellular thermophilic cyanobacteria inhabiting hot spring microbial mats Proceedings of the National Academy of Sciences of the United States of America. ,vol. 103, pp. 2398- 2403 ,(2006) , 10.1073/PNAS.0507513103
R. Levy, E. Borenstein, Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules Proceedings of the National Academy of Sciences of the United States of America. ,vol. 110, pp. 12804- 12809 ,(2013) , 10.1073/PNAS.1300926110
Yikun Tan, James C. Liao, Metabolic ensemble modeling for strain engineers. Biotechnology Journal. ,vol. 7, pp. 343- 353 ,(2012) , 10.1002/BIOT.201100186
Lynn J. Rothschild, Rocco L. Mancinelli, Life in Extreme Environments Nature. ,vol. 409, pp. 1092- 1101 ,(2001) , 10.1038/35059215
Leonid Chindelevitch, Jason Trigg, Aviv Regev, Bonnie Berger, An exact arithmetic toolbox for a consistent and reproducible structural analysis of metabolic network models Nature Communications. ,vol. 5, pp. 4893- 4893 ,(2014) , 10.1038/NCOMMS5893
Minoru Kanehisa, Susumu Goto, KEGG: Kyoto Encyclopedia of Genes and Genomes Nucleic Acids Research. ,vol. 28, pp. 27- 30 ,(1999) , 10.1093/NAR/28.1.27