Optimizing performance of nonparametric species richness estimators under constrained sampling.

作者: Harshana Rajakaruna , D. Andrew R. Drake , Farrah T. Chan , Sarah A. Bailey

DOI: 10.1002/ECE3.2463

关键词:

摘要: Understanding the functional relationship between sample size and performance of species richness estimators is necessary to optimize limited sampling resources against estimation error. Nonparametric such as Chao Jackknife demonstrate strong performances, but consensus lacking which estimator performs better under constrained sampling. We explore a method improve scenario. The we propose involves randomly splitting species-abundance data from single into two equally sized samples, using an appropriate incidence-based estimate richness. To test this method, assume lognormal distribution (SAD) with varying coefficients variation (CV), generate samples MCMC simulations, use expected mean-squared error criterion estimators. for Chao, Jackknife, ICE, ACE Between abundance-based sample, split-in-two Chao2 performed best when CV   0.65, given that ratio observed greater than critical value by power function CV respect abundance sampled population. proposed increases substantially more effective rare are in assemblage. also show works qualitatively similarly well SADs log series, geometric negative binomial. application estimating zooplankton communities ballast water. alternative large number individuals increase accuracy estimations; therefore, it wide range resource-limited scenarios ecology.

参考文章(15)
A. Chao, Nonparametric estimation of the number of classes in a population Scandinavian Journal of Statistics. ,vol. 11, pp. 265- 270 ,(1984)
Carola V. Basualdo, Choosing the best non-parametric richness estimator for benthic macroinvertebrates databases Revista de la Sociedad Entomológica Argentina. ,vol. 70, pp. 27- 38 ,(2011)
F. W. Preston, The Commonness, And Rarity, of Species Ecology. ,vol. 29, pp. 254- 283 ,(1948) , 10.2307/1930989
Brian J. McGill, A test of the unified neutral theory of biodiversity Nature. ,vol. 422, pp. 881- 885 ,(2003) , 10.1038/NATURE01583
J. Bunge, M. Fitzpatrick, Estimating the Number of Species: A Review Journal of the American Statistical Association. ,vol. 88, pp. 364- 373 ,(1993) , 10.1080/01621459.1993.10594330
Julie L. Lockwood, Phillip Cassey, Tim M. Blackburn, The more you introduce the more you get: the role of colonization pressure and propagule pressure in invasion ecology Diversity and Distributions. ,vol. 15, pp. 904- 910 ,(2009) , 10.1111/J.1472-4642.2009.00594.X
Luís Borda-de-Água, Stephen P. Hubbell, The Unified Neutral Theory of Biodiversity and Biogeography ,(2001)
Ulrich Brose, Neo D. Martinez, Richard J. Williams, ESTIMATING SPECIES RICHNESS: SENSITIVITY TO SAMPLE COVERAGE AND INSENSITIVITY TO SPATIAL PATTERNS Ecology. ,vol. 84, pp. 2364- 2377 ,(2003) , 10.1890/02-0558
Sean R Connolly, Terry P Hughes, David R Bellwood, Ronald H Karlson, Community Structure of Corals and Reef Fishes at Multiple Scales Science. ,vol. 309, pp. 1363- 1365 ,(2005) , 10.1126/SCIENCE.1113281
B. A. WALTHER, S. MORAND, Comparative performance of species richness estimation methods. Parasitology. ,vol. 116, pp. 395- 405 ,(1998) , 10.1017/S0031182097002230