A network inference approach to understanding musculoskeletal disorders

作者: Nil Turan

DOI:

关键词:

摘要: Musculoskeletal disorders are among the most important health problem affecting quality of life and contributing to a high burden on healthcare systems worldwide. Understanding molecular mechanisms underlying these is crucial for development efficient treatments. In this thesis, musculoskeletal including muscle wasting, bone loss cartilage deformation have been studied using biology approaches. Muscle wasting occurring as systemic effect in COPD patients has investigated with an integrative network inference approach. This work lead model describing relationship between physiological response training inflammatory mediators. shown first time that oxygen dependent changes expression epigenetic modifiers not chronic inflammation may be causally linked dysfunction. Bone observed ageing, arthritis multiple myeloma (MM) also by novel modularization approach developed within thesis. methodology allows integration multi-level dataset large interaction networks. It aims identify sub-networks genes differentially expressed experimental conditions co-regulated across samples different biological systems. study identified several potential key players such Myc, DUSP6 components Notch could enhance osteogenic differentiation MM patients. conclusion, thesis present effectiveness approaches understanding complex diseases applied studying other datasets.

参考文章(216)
Philip D. Gollnick, Bertil Sj�din, Jan Karlsson, Eva Jansson, Bengt Saltin, Human soleus muscle: A comparison of fiber composition and enzyme activities with other leg muscles Pflügers Archiv: European Journal of Physiology. ,vol. 348, pp. 247- 255 ,(1974) , 10.1007/BF00587415
David J. Glass, Skeletal muscle hypertrophy and atrophy signaling pathways The International Journal of Biochemistry & Cell Biology. ,vol. 37, pp. 1974- 1984 ,(2005) , 10.1016/J.BIOCEL.2005.04.018
Ioannis A Maraziotis, Konstantina Dimitrakopoulou, Anastasios Bezerianos, Growing functional modules from a seed protein via integration of protein interaction and gene expression data BMC Bioinformatics. ,vol. 8, pp. 408- 408 ,(2007) , 10.1186/1471-2105-8-408
J. M. Seymour, M. A. Spruit, N. S. Hopkinson, S. A. Natanek, W. D.-C. Man, A. Jackson, H. R. Gosker, A. M. W. J. Schols, J. Moxham, M. I. Polkey, E. F. M. Wouters, The prevalence of quadriceps weakness in COPD and the relationship with disease severity European Respiratory Journal. ,vol. 36, pp. 81- 88 ,(2010) , 10.1183/09031936.00104909
M. JEFFERY MADOR, THOMAS J. KUFEL, LILIBETH PINEDA, Quadriceps fatigue after cycle exercise in patients with chronic obstructive pulmonary disease. American Journal of Respiratory and Critical Care Medicine. ,vol. 161, pp. 447- 453 ,(2000) , 10.1164/AJRCCM.161.2.9904092
H. E. Lockstone, Exon array data analysis using Affymetrix power tools and R statistical software Briefings in Bioinformatics. ,vol. 12, pp. 634- 644 ,(2011) , 10.1093/BIB/BBQ086
David Z. Qian, Xiaofei Wang, Sushant K. Kachhap, Yukihiko Kato, Yongfeng Wei, Lu Zhang, Peter Atadja, Roberto Pili, The histone deacetylase inhibitor NVP-LAQ824 Inhibits angiogenesis and has a greater antitumor effect in combination with the vascular endothelial growth factor receptor tyrosine kinase inhibitor PTK787/ZK222584 Cancer Research. ,vol. 64, pp. 6626- 6634 ,(2004) , 10.1158/0008-5472.CAN-04-0540
Giovanna Nalesso, Joanna Sherwood, Jessica Bertrand, Thomas Pap, Manoj Ramachandran, Cosimo De Bari, Costantino Pitzalis, Francesco Dell'Accio, WNT-3A modulates articular chondrocyte phenotype by activating both canonical and noncanonical pathways Journal of Cell Biology. ,vol. 193, pp. 551- 564 ,(2011) , 10.1083/JCB.201011051
W. C. Hallows, S. Lee, J. M. Denu, Sirtuins deacetylate and activate mammalian acetyl-CoA synthetases. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 103, pp. 10230- 10235 ,(2006) , 10.1073/PNAS.0604392103