The Role of Phylogenetics as a Tool to Predict the Spread of Resistance.

作者: Anna Zhukova , Teresa Cutino-Moguel , Olivier Gascuel , Deenan Pillay

DOI: 10.1093/INFDIS/JIX411

关键词:

摘要: Drug resistance mutations emerge in genetic sequences of HIV through drug-selective pressure. can be transmitted. In this review we discuss phylogenetic methods used to study the emergence drug and spread resistant viruses.

参考文章(30)
Sheena McCormack, David T Dunn, Monica Desai, David I Dolling, Mitzy Gafos, Richard Gilson, Ann K Sullivan, Amanda Clarke, Iain Reeves, Gabriel Schembri, Nicola Mackie, Christine Bowman, Charles J Lacey, Vanessa Apea, Michael Brady, Julie Fox, Stephen Taylor, Simone Antonucci, Saye H Khoo, James Rooney, Anthony Nardone, Martin Fisher, Alan McOwan, Andrew N Phillips, Anne M Johnson, Brian Gazzard, Owen N Gill, Pre-exposure prophylaxis to prevent the acquisition of HIV-1 infection (PROUD): effectiveness results from the pilot phase of a pragmatic open-label randomised trial The Lancet. ,vol. 387, pp. 53- 60 ,(2016) , 10.1016/S0140-6736(15)00056-2
Vivek Jain, Teri Liegler, Eric Vittinghoff, Wendy Hartogensis, Peter Bacchetti, Lauren Poole, Lisa Loeb, Christopher D. Pilcher, Robert M. Grant, Steven G. Deeks, Frederick M. Hecht, Transmitted Drug Resistance in Persons with Acute/Early HIV-1 in San Francisco, 2002-2009 PLoS ONE. ,vol. 5, pp. e15510- ,(2010) , 10.1371/JOURNAL.PONE.0015510
V. Supervie, J. G. Garcia-Lerma, W. Heneine, S. Blower, HIV, transmitted drug resistance, and the paradox of preexposure prophylaxis Proceedings of the National Academy of Sciences of the United States of America. ,vol. 107, pp. 12381- 12386 ,(2010) , 10.1073/PNAS.1006061107
T. Leitner, D. Escanilla, C. Franzen, M. Uhlen, J. Albert, Accurate reconstruction of a known HIV-1 transmission history by phylogenetic tree analysis Proceedings of the National Academy of Sciences of the United States of America. ,vol. 93, pp. 10864- 10869 ,(1996) , 10.1073/PNAS.93.20.10864
D Pillay, J Herbeck, M Cohen, T de Olivera, C Fraser, O Ratmann, A Leigh-Brown, P Kellam, on behalf of the PANGEA-HIV Consortium, None, PANGEA-HIV: phylogenetics for generalised epidemics in Africa Lancet Infectious Diseases. ,vol. 15, pp. 259- 261 ,(2015) , 10.1016/S1473-3099(15)70036-8
François Chevenet, Matthieu Jung, Martine Peeters, Tulio de Oliveira, Olivier Gascuel, Searching for virus phylotypes Bioinformatics. ,vol. 29, pp. 561- 570 ,(2013) , 10.1093/BIOINFORMATICS/BTT010
Sabine Yerly, Thomas Junier, Angèle Gayet-Ageron, Emmanuelle Boffi El Amari, Viktor von Wyl, Huldrych F Günthard, Bernard Hirschel, Evgeny Zdobnov, Laurent Kaiser, Swiss HIV Cohort Study, The impact of transmission clusters on primary drug resistance in newly diagnosed HIV-1 infection. AIDS. ,vol. 23, pp. 1415- 1423 ,(2009) , 10.1097/QAD.0B013E32832D40AD
Valentina Cambiano, Silvia Bertagnolio, Michael R. Jordan, Deenan Pillay, Joseph H. Perriëns, Francois Venter, Jens Lundgren, Andrew Phillips, Predicted levels of HIV drug resistance AIDS. ,vol. 28, pp. S15- S23 ,(2014) , 10.1097/QAD.0000000000000082
Virginie Supervie, Meagan Barrett, James S. Kahn, Godfrey Musuka, Themba Lebogang Moeti, Lesego Busang, Sally Blower, Modeling dynamic interactions between pre-exposure prophylaxis interventions & treatment programs: predicting HIV transmission & resistance Scientific Reports. ,vol. 1, pp. 185- 185 ,(2011) , 10.1038/SREP00185