The reverse transcription signature of N-1-methyladenosine in RNA-Seq is sequence dependent.

作者: Ralf Hauenschild , Lyudmil Tserovski , Katharina Schmid , Kathrin Thüring , Marie-Luise Winz

DOI: 10.1093/NAR/GKV895

关键词:

摘要: … By application to a variety of native and synthetic RNA … on RNA structure and on the nature of the nucleotide 3′ of m 1 A in the template RNA, meaning it is sequence dependent. The …

参考文章(48)
B.E.H. Maden, The numerous modified nucleotides in eukaryotic ribosomal RNA. Progress in Nucleic Acid Research and Molecular Biology. ,vol. 39, pp. 241- 303 ,(1990) , 10.1016/S0079-6603(08)60629-7
Matthew Wiener, Andy Liaw, Classification and Regression by randomForest ,(2007)
Yuri Motorin, Sébastien Muller, Isabelle Behm‐Ansmant, Christiane Branlant, Identification of modified residues in RNAs by reverse transcription-based methods. Methods in Enzymology. ,vol. 425, pp. 21- 53 ,(2007) , 10.1016/S0076-6879(07)25002-5
Micah D. Shepherd, Madan K. Kharel, Mary A. Bosserman, Jürgen Rohr, Laboratory maintenance of Streptomyces species. Current protocols in microbiology. ,vol. 18, ,(2010) , 10.1002/9780471729259.MC10E01S18
Rakesh Srivastava, KP Gopinathan, Ribosomal RNA methylation in Mycobacterium smegmatis SN2. Biochemistry international. ,vol. 15, pp. 1179- 1188 ,(1987)
J. Anderson, L. Phan, A. G. Hinnebusch, The Gcd10p/Gcd14p complex is the essential two-subunit tRNA(1-methyladenosine) methyltransferase of Saccharomyces cerevisiae Proceedings of the National Academy of Sciences of the United States of America. ,vol. 97, pp. 5173- 5178 ,(2000) , 10.1073/PNAS.090102597
Frank Jühling, Mario Mörl, Roland K Hartmann, Mathias Sprinzl, Peter F Stadler, Joern Pütz, tRNAdb 2009: compilation of tRNA sequences and tRNA genes Nucleic Acids Research. ,vol. 37, pp. 159- 162 ,(2009) , 10.1093/NAR/GKN772
Sylvie Auxilien, Gérard Keith, Stuart F. J. Le Grice, Jean-Luc Darlix, Role of Post-transcriptional Modifications of Primer tRNALys,3in the Fidelity and Efficacy of Plus Strand DNA Transfer during HIV-1 Reverse Transcription Journal of Biological Chemistry. ,vol. 274, pp. 4412- 4420 ,(1999) , 10.1074/JBC.274.7.4412
Laurence Lempereur, Monique Nicoloso, Nadine Riehl, Chantal Ehresmann, Bernard Ehresmann, Jean-Pierre Bachellerie, Conformation of yeast 18S rRNA. Direct chemical probing of the 5′ domain in ribosomal subunits and in deproteinized RNA by reverse transcriptase mapping of dimethyl sulfate-accessible sites Nucleic Acids Research. ,vol. 13, pp. 8339- 8357 ,(1985) , 10.1093/NAR/13.23.8339
Magdalena A. Machnicka, Kaja Milanowska, Okan Osman Oglou, Elzbieta Purta, Malgorzata Kurkowska, Anna Olchowik, Witold Januszewski, Sebastian Kalinowski, Stanislaw Dunin-Horkawicz, Kristian M. Rother, Mark Helm, Janusz M. Bujnicki, Henri Grosjean, MODOMICS: a database of RNA modification pathways—2013 update Nucleic Acids Research. ,vol. 41, pp. 262- 267 ,(2012) , 10.1093/NAR/GKS1007