The bacterial replicative helicase DnaB evolved from a RecA duplication.

作者: Nick V. Grishin , L. Aravind , L. Aravind , Eugene V. Koonin , Detlef D. Leipe

DOI: 10.1101/GR.10.1.5

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摘要: The RecA/Rad51/DCM1 family of ATP-dependent recombinases plays a crucial role in genetic recombination and double-stranded DNA break repair Archaea, Bacteria, Eukaryota. DnaB is the replication fork helicase all Bacteria. We show here that shares significant sequence similarity with RecA Rad51/DMC1 two other related families ATPases, Sms KaiC. conserved region spans entire ATP- DNA-binding domain consists about 250 amino acid residues includes 7 distinct motifs. Comparison three-dimensional structure Escherichia coli phage T7 (gp4) reveals area conservation central parallel beta-sheet most connecting helices loops as well smaller amino-terminal helix carboxy-terminal beta-meander. Additionally, we animals, plants, malarial Plasmodium but not Saccharomyces cerevisiae encode previously undetected homolog might function mitochondria. from Arabidopsis also contains DnaG-primase nematode seems to contain an inactivated version primase. This organization reminiscent bacteriophage primases-helicases suggests have been horizontally introduced into nuclear eukaryotic genome via vector. hypothesize originated duplication RecA-like ancestor after divergence bacteria Archaea eukaryotes, which indicates helicases Bacteria Archaea/Eukaryota evolved independently.

参考文章(74)
Johan Weigelt, Caroline S. Miles, Nicholas E. Dixon, Gottfried Otting, Backbone NMR assignments and secondary structure of the N-terminal domain of DnaB helicase from E. coli. Journal of Biomolecular NMR. ,vol. 11, pp. 233- 234 ,(1998) , 10.1023/A:1008208020167
Y Song, N J Sargentini, Escherichia coli DNA repair genes radA and sms are the same gene. Journal of Bacteriology. ,vol. 178, pp. 5045- 5048 ,(1996) , 10.1128/JB.178.16.5045-5048.1996
Alison H. Mitchell, Stephen C. West, Hexameric rings of Escherichia coli RuvB protein. Cooperative assembly, processivity and ATPase activity. Journal of Molecular Biology. ,vol. 243, pp. 208- 215 ,(1994) , 10.1006/JMBI.1994.1648
Stephen F. Altschul, Warren Gish, Local alignment statistics. Methods in Enzymology. ,vol. 266, pp. 460- 480 ,(1996) , 10.1016/S0076-6879(96)66029-7
Karen E. Nelson, Rebecca A. Clayton, Steven R. Gill, Michelle L. Gwinn, Robert J. Dodson, Daniel H. Haft, Erin K. Hickey, Jeremy D. Peterson, William C. Nelson, Karen A. Ketchum, Lisa McDonald, Teresa R. Utterback, Joel A. Malek, Katja D. Linher, Mina M. Garrett, Ashley M. Stewart, Matthew D. Cotton, Matthew S. Pratt, Cheryl A. Phillips, Delwood Richardson, John Heidelberg, Granger G. Sutton, Robert D. Fleischmann, Jonathan A. Eisen, Owen White, Steven L. Salzberg, Hamilton O. Smith, J. Craig Venter, Claire M. Fraser, Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima Nature. ,vol. 399, pp. 323- 329 ,(1999) , 10.1038/20601
L. Aravind, Eugene V. Koonin, John L. Spouge, Andrew F. Neuwald, AAA+: A Class of Chaperone-Like ATPases Associated with the Assembly, Operation, and Disassembly of Protein Complexes Genome Research. ,vol. 9, pp. 27- 43 ,(1999) , 10.1101/GR.9.1.27
Thomas Kodadek, Robert Barstead, Michael N. Conrad, Michael E. Dresser, Hua Jiang, Debra J. Ewing, Ana M. Dominguez, DMC1 functions in a Saccharomyces cerevisiae meiotic pathway that is largely independent of the RAD51 pathway. Genetics. ,vol. 147, pp. 533- 544 ,(1997) , 10.1093/GENETICS/147.2.533