Is My Network Module Preserved and Reproducible?
作者： Peter Langfelder , Rui Luo , Michael C. Oldham , Steve Horvath
DOI: 10.1371/JOURNAL.PCBI.1001057
关键词:
摘要: … a high module membership in the reference network will have a high module membership in the test network as well; conversely, variables with relatively low module membership in …
harvard.edu
core.ac.uk
paperity.org
researchgate.net 参考文章(59)
Saied A. Jaradat, Michael Q. Zhang, Minoru S.H. Ko, Tetsuya S. Tanaka, Nila Banerjee, Gengxin Chen, Evaluation and comparison of clustering algorithms in analyzing es cell gene expression data Statistica Sinica. ,vol. 12, pp. 241- 262 ,(2002)
Finding Groups in Data John Wiley & Sons, Inc.. ,(1990) , 10.1002/9780470316801
Sandrine Dudoit, Jane Fridlyand, A prediction-based resampling method for estimating the number of clusters in a dataset Genome Biology. ,vol. 3, pp. 1- 21 ,(2002) , 10.1186/GB-2002-3-7-RESEARCH0036
Marc RJ Carlson, Bin Zhang, Zixing Fang, Paul S Mischel, Steve Horvath, Stanley F Nelson, Gene connectivity, function, and sequence conservation: predictions from modular yeast co-expression networks. BMC Genomics. ,vol. 7, pp. 40- 40 ,(2006) , 10.1186/1471-2164-7-40
Peter Langfelder, Steve Horvath, Eigengene networks for studying the relationships between co-expression modules BMC Systems Biology. ,vol. 1, pp. 54- 54 ,(2007) , 10.1186/1752-0509-1-54
Peter Langfelder, Steve Horvath, WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics. ,vol. 9, pp. 559- 559 ,(2008) , 10.1186/1471-2105-9-559
Berend Snel, Vera Van Noort, Martijn A Huynen, Gene co-regulation is highly conserved in the evolution of eukaryotes and prokaryotes Nucleic Acids Research. ,vol. 32, pp. 4725- 4731 ,(2004) , 10.1093/NAR/GKH815
M. P. Keller, Y. Choi, P. Wang, D. Belt Davis, M. E. Rabaglia, A. T. Oler, D. S. Stapleton, C. Argmann, K. L. Schueler, S. Edwards, H. A. Steinberg, E. Chaibub Neto, R. Kleinhanz, S. Turner, M. K. Hellerstein, E. E. Schadt, B. S. Yandell, C. Kendziorski, A. D. Attie, A gene expression network model of type 2 diabetes links cell cycle regulation in islets with diabetes susceptibility Genome Research. ,vol. 18, pp. 706- 716 ,(2008) , 10.1101/GR.074914.107
Anatole Ghazalpour, Sudheer Doss, Bin Zhang, Susanna Wang, Christopher Plaisier, Ruth Castellanos, Alec Brozell, Eric E Schadt, Thomas A Drake, Aldons J Lusis, Steve Horvath, Integrating Genetic and Network Analysis to Characterize Genes Related to Mouse Weight PLOS Genetics. ,vol. 2, pp. 1182- 1192 ,(2005) , 10.1371/JOURNAL.PGEN.0020130
Hiroyuki Kurata, Hana El-Samad, Rei Iwasaki, Hisao Ohtake, John C Doyle, Irina Grigorova, Carol A Gross, Mustafa Khammash, Module-based analysis of robustness tradeoffs in the heat shock response system. PLOS Computational Biology. ,vol. 2, pp. 663- 675 ,(2005) , 10.1371/JOURNAL.PCBI.0020059