microRNA Profiling: An Overview of Current Technologies and Applications

作者: Sinead M. Smith , David W. Murray

DOI: 10.1016/B978-0-444-62650-9.00002-6

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摘要: Abstract microRNAs (miRNAs) are small, evolutionarily conserved, noncoding RNAs that posttranscriptionally regulate specific gene products resulting in altered protein expression. miRNAs target messenger RNA molecules either by guiding degradation through a mechanism similar to interference or inhibiting translation. As such, control the expression of thousands genes broad spectrum normal physiological contexts and disease settings. Recent advances high-throughput methods for profiling microRNA identification targets have ushered new era research transcriptional regulation. Understanding patterns provides an insight into regulation, biomarker identification, potential strategies therapy. This chapter overview recently developed technologies investigation function, including quantitative PCR, microarray analysis, next-generation sequencing, as well useful bioinformatics tools differential analysis prediction. In addition, contribution these miRNA cancer is discussed.

参考文章(106)
Sinéad M. Smith, David W. Murray, An Overview of MicroRNA Methods: Expression Profiling and Target Identification Methods in Molecular Biology. ,vol. 823, pp. 119- 138 ,(2012) , 10.1007/978-1-60327-216-2_9
Sweta Rani, Kathy Gately, John Crown, Ken O’Byrne, Lorraine O’Driscoll, Global Analysis of Serum microRNAs as Potential Biomarkers for Lung Adenocarcinoma Cancer Biology & Therapy. ,vol. 14, pp. 1104- 1112 ,(2012) , 10.4161/CBT.26370
Gary Ruvkun, Brenda J. Reinhart, Frank J. Slack, Michael Basson, Amy E. Pasquinelli, Jill C. Bettinger, Ann E. Rougvie, H. Robert Horvitz, The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans Nature. ,vol. 403, pp. 901- 906 ,(2000) , 10.1038/35002607
Sohail F. Tavazoie, Claudio Alarcón, Thordur Oskarsson, David Padua, Qiongqing Wang, Paula D. Bos, William L. Gerald, Joan Massagué, Endogenous human microRNAs that suppress breast cancer metastasis Nature. ,vol. 451, pp. 147- 152 ,(2008) , 10.1038/NATURE06487
Lee P Lim, Margaret E Glasner, Soraya Yekta, Christopher B Burge, David P Bartel, Vertebrate microRNA genes. Science. ,vol. 299, pp. 1540- 1540 ,(2003) , 10.1126/SCIENCE.1080372
Bríd M. Ryan, Ana I. Robles, Curtis C. Harris, Genetic variation in microRNA networks: the implications for cancer research Nature Reviews Cancer. ,vol. 10, pp. 389- 402 ,(2010) , 10.1038/NRC2867
Hristo B Houbaviy, Michael F Murray, Phillip A Sharp, Embryonic Stem Cell-Specific MicroRNAs Developmental Cell. ,vol. 5, pp. 351- 358 ,(2003) , 10.1016/S1534-5807(03)00227-2
Tomoyuki Nakasa, Shigeru Miyaki, Atsuko Okubo, Megumi Hashimoto, Keiichiro Nishida, Mitsuo Ochi, Hiroshi Asahara, Expression of MicroRNA-146 in rheumatoid arthritis synovial tissue Arthritis & Rheumatism. ,vol. 58, pp. 1284- 1292 ,(2008) , 10.1002/ART.23429
Kevin C. Dorff, Nyasha Chambwe, Zachary Zeno, Manuele Simi, Rita Shaknovich, Fabien Campagne, GobyWeb: Simplified Management and Analysis of Gene Expression and DNA Methylation Sequencing Data PLoS ONE. ,vol. 8, pp. e69666- ,(2013) , 10.1371/JOURNAL.PONE.0069666