blastjs: a BLAST+ wrapper for Node.js
作者： Martin Page , Dan MacLean , Christian Schudoma
DOI: 10.1186/S13104-016-1938-1
关键词:
摘要: … effortless way for bioinformatics application developers of adding significant … + applications) to bioinformatics applications based on Node.js. We employ blastjs for in-house applications …
biomedcentral.com
springer.com
core.ac.uk
paperity.org参考文章(10)
Gregory A Petsko, The right to be wrong. Genome Biology. ,vol. 9, pp. 102- 102 ,(2008) , 10.1186/GB-2008-9-2-102
Peter J.A. Cock, Björn A. Grüning, Konrad Paszkiewicz, Leighton Pritchard, Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology PeerJ. ,vol. 1, ,(2013) , 10.7717/PEERJ.167
S Altschula, Warren Gisha, Webb Millerb, E Meyersc, D Lipmana, None, Basic Local Alignment Search Tool Journal of Molecular Biology. ,vol. 215, pp. 403- 410 ,(1990) , 10.1016/S0022-2836(05)80360-2
Jesus Enrique Herrera-Galeano, Kenneth G Frey, Regina Z Cer, Alfred J Mateczun, Kimberly A Bishop-Lilly, Vishwesh P Mokashi, BLASTPLOT: a PERL module to plot next generation sequencing NCBI-BLAST results Source Code for Biology and Medicine. ,vol. 9, pp. 7- 7 ,(2014) , 10.1186/1751-0473-9-7
Brian D O'Connor, Allen Day, Scott Cain, Olivier Arnaiz, Linda Sperling, Lincoln D Stein, GMODWeb: a web framework for the Generic Model Organism Database. Genome Biology. ,vol. 9, pp. 1- 11 ,(2008) , 10.1186/GB-2008-9-6-R102
W. Deng, D. C. Nickle, G. H. Learn, B. Maust, J. I. Mullins, ViroBLAST: a stand-alone BLAST web server for flexible queries of multiple databases and user's datasets. Bioinformatics. ,vol. 23, pp. 2334- 2336 ,(2007) , 10.1093/BIOINFORMATICS/BTM331
Christiam Camacho, George Coulouris, Vahram Avagyan, Ning Ma, Jason Papadopoulos, Kevin Bealer, Thomas L Madden, BLAST+: architecture and applications. BMC Bioinformatics. ,vol. 10, pp. 421- 421 ,(2009) , 10.1186/1471-2105-10-421
Guy Yachdav, Tatyana Goldberg, Sebastian Wilzbach, David Dao, Iris Shih, Saket Choudhary, Steve Crouch, Max Franz, Alexander García, Leyla J García, Björn A Grüning, Devasena Inupakutika, Ian Sillitoe, Anil S Thanki, Bruno Vieira, José M Villaveces, Maria V Schneider, Suzanna Lewis, Steve Pettifer, Burkhard Rost, Manuel Corpas, Anatomy of BioJS, an open source community for the life sciences eLife. ,vol. 4, ,(2015) , 10.7554/ELIFE.07009
Zheng Zhang, Webb Miller, David J Lipman, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research. ,vol. 25, pp. 3389- 3402 ,(1997) , 10.1093/NAR/25.17.3389
Anurag Priyam, Ben J Woodcroft, Vivek Rai, Alekhya Munagala, Ismail Moghul, Filip Ter, Mark Anthony Gibbins, HongKee Moon, Guy Leonard, Wolfgang Rumpf, Yannick Wurm, Sequenceserver: a modern graphical user interface for custom BLAST databases bioRxiv. pp. 033142- ,(2015) , 10.1101/033142